HL_7V2O_008

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.098

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7V2O|1|A|C|316
7V2O|1|A|A|317
7V2O|1|A|C|318
7V2O|1|A|U|319
7V2O|1|A|G|320
7V2O|1|A|A|321
7V2O|1|A|G|322
7V2O|1|A|A|323
7V2O|1|A|C|324
7V2O|1|A|A|325
7V2O|1|A|C|326
7V2O|1|A|G|327
7V2O|1|A|G|328
7V2O|1|A|G|329

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20