HL_7V2O_012

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_012 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3857

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7V2O|1|A|C|452
7V2O|1|A|C|453
7V2O|1|A|G|454
7V2O|1|A|A|455
7V2O|1|A|C|456
7V2O|1|A|G|457
7V2O|1|A|A|458
7V2O|1|A|G|459
7V2O|1|A|G|460

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16