HL_7V2O_025

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

7V2O|1|A|U|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_025 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3709

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7V2O|1|A|G|1116
7V2O|1|A|G|1117
7V2O|1|A|U|1118
7V2O|1|A|U|1119
7V2O|1|A|C|1120
7V2O|1|A|G|1121
7V2O|1|A|G|1122
7V2O|1|A|C|1123
7V2O|1|A|C|1124

Current chains

Chain A

16s ribosomal RNA

Nearby chains