HL_7V2O_031

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

7V2O|1|A|G|1494, 7V2O|1|A|G|1495, 7V2O|1|A|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2O_031 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.5087

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7V2O|1|A|C|1493
7V2O|1|A|G|1494
7V2O|1|A|G|1495
7V2O|1|A|A|1496
7V2O|1|A|A|1497
7V2O|1|A|G|1498

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain U

Ribosomal RNA small subunit methyltransferase A