HL_7VNW_007

3D structure

PDB id

7VNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated)

Experimental method

X-RAY DIFFRACTION

Resolution

2.61 Å

Loop

Sequence

(PSU)A(7SN)C(OMC)UGGUUAG

Length

12 nucleotides

Bulged bases

7VNW|1|A|G|18, 7VNW|1|A|G|19, 7VNW|1|A|U|20, 7VNW|1|A|U|20|||a

QA status

Modified nucleotides: PSU, 7SN, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7VNW_007 not in the Motif Atlas

Homologous match to HL_7VNV_007

Geometric discrepancy: 0.2326

The information below is about HL_7VNV_007

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_63054.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7VNW|1|A|PSU|13
7VNW|1|A|A|14
7VNW|1|A|7SN|15
7VNW|1|A|C|16
7VNW|1|A|OMC|17
7VNW|1|A|U|17|||a
7VNW|1|A|G|18
7VNW|1|A|G|19
7VNW|1|A|U|20
7VNW|1|A|U|20|||a
7VNW|1|A|A|21
7VNW|1|A|G|22

Current chains

Chain A

RNA (78-MER)

Nearby chains

Chain B

Transfer RNA; tRNA