HL_7WTL_026

3D structure

PDB id

7WTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

7WTL|1|C2|A|1782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTL_026 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1689

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7WTL|1|C2|G|1778
7WTL|1|C2|U|1779
7WTL|1|C2|G|1780
7WTL|1|C2|A|1781
7WTL|1|C2|A|1782
7WTL|1|C2|C|1783

Current chains

Chain C2

18S rRNA

Nearby chains

Chain JL

Dimethyladenosine transferase