HL_7WTM_014

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1083

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTM|1|C2|A|520
7WTM|1|C2|A|521
7WTM|1|C2|U|522
7WTM|1|C2|G|523
7WTM|1|C2|U|524
7WTM|1|C2|A|525
7WTM|1|C2|A|526
7WTM|1|C2|A|527
7WTM|1|C2|U|528
7WTM|1|C2|A|529
7WTM|1|C2|C|530
7WTM|1|C2|C|531
7WTM|1|C2|U|532

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A