RNA 3D Hub //

7WTM Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7WTM_0011/C2/7:17No text annotation
homologous
HL_8C3A_192
NA
HL_7WTM_0031/C2/154:160GNRA related
geometric
HL_4V88_188
NA
HL_7WTM_0041/C2/190:195No text annotation
homologous
HL_8P9A_193
HL_53890.2
HL_7WTM_0051/C2/230:235No text annotation
geometric
HL_4V88_190
NA
HL_7WTM_0061/C2/243:250T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7WTM_0071/C2/276:279Mini UNCG
geometric
HL_4V88_192
NA
HL_7WTM_0081/C2/330:338GNRA related
geometric
HL_4V88_193
NA
HL_7WTM_0091/C2/368:373No text annotation
geometric
HL_4V88_194
NA
HL_7WTM_0101/C2/393:404No text annotation
geometric
HL_4V88_195
NA
HL_7WTM_0111/C2/414:419UNCG
geometric
HL_5ML7_002
HL_34617.5
HL_7WTM_0121/C2/450:456No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7WTM_0141/C2/520:532No text annotation
geometric
HL_4V88_199
NA
HL_7WTM_0151/C2/569:574No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7WTM_0171/C2/764:772No text annotation
geometric
HL_4V88_203
NA
HL_7WTM_0181/C2/777:783No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7WTM_0191/C2/829:843Pseudoknot geometry
geometric
HL_4V88_205
NA
HL_7WTM_0201/C2/900:909No text annotation
geometric
HL_4V88_206
NA
HL_7WTM_0211/C2/937:942GNRA
geometric
HL_4V88_207
NA
HL_7WTM_0221/C2/997:1007No text annotation
geometric
HL_8C3A_039
NA
HL_7WTM_0231/C2/1055:1064No text annotation
geometric
HL_4V88_209
NA
HL_7WTM_0241/C2/1084:1089GNRA
geometric
HL_4V88_210
NA
HL_7WTM_0251/C2/1121:1126GNRA
geometric
HL_4V88_211
NA
HL_7WTM_0261/C2/1778:1783No text annotation
geometric
HL_2Y9H_003
HL_75660.5

Problematic loops

#loop idProblemSequence
HL_7WTM_002No text annotation
HL_7WTM_027No text annotation
HL_7WTM_013No text annotation
HL_7WTM_016No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7WTM_0011/C2/24:26,
1/C2/600:601		Single bulged C
geometric
IL_4V88_384
NA
IL_7WTM_0021/C2/35:37,
1/C2/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_7WTM_0031/C2/37:41,
1/C2/466:471		Triple sheared related
geometric
IL_4V88_386
NA
IL_7WTM_0041/C2/42:48,
1/C2/431:433		No text annotation
geometric
IL_4V88_387
NA
IL_7WTM_0051/C2/50:52,
1/C2/428:429		Minor groove platform
geometric
IL_4LFB_004
IL_51454.3
IL_7WTM_0061/C2/58:63,
1/C2/87:89		No text annotation
geometric
IL_4V88_389
NA
IL_7WTM_0071/C2/64:69,
1/C2/82:86		No text annotation
geometric
IL_4V88_390
NA
IL_7WTM_0081/C2/109:112,
1/C2/302:305		Tandem non-canonical cWW pairs
geometric
IL_4V88_391
NA
IL_7WTM_0091/C2/113:116,
1/C2/300:301		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7WTM_0101/C2/117:122,
1/C2/295:299		No text annotation
geometric
IL_4V88_393
NA
IL_7WTM_0111/C2/144:149,
1/C2/165:171		tWH-tWH-tHW-tHW
geometric
IL_4LFB_009
IL_12745.1
IL_7WTM_0121/C2/150:152,
1/C2/162:164		Isolated non-canonical cWW contact
geometric
IL_1SI2_002
IL_44465.1
IL_7WTM_0611/C2/186:189,
1/C2/196:199		Double sheared
homologous
IL_8CRE_402
IL_09705.15
IL_7WTM_0141/C2/204:206,
1/C2/259:263		Major groove platform with extra cWW
geometric
IL_4V88_397
NA
IL_7WTM_0151/C2/206:208,
1/C2/257:259		Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_7WTM_0161/C2/265:267,
1/C2/288:289		Single bulged A
geometric
IL_4V88_399
NA
IL_7WTM_0171/C2/270:273,
1/C2/283:285		No text annotation
geometric
IL_4V88_400
NA
IL_7WTM_0181/C2/275:276,
1/C2/279:281		Single bulged U
geometric
IL_5FQ5_002
IL_89505.4
IL_7WTM_0191/C2/311:316,
1/C2/348:355		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7WTM_0201/C2/318:323,
1/C2/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7WTM_0211/C2/363:365,
1/C2/376:381		No text annotation
geometric
IL_4V88_404
NA
IL_7WTM_0221/C2/389:391,
1/C2/406:408		Isolated cWH basepair
geometric
IL_6IA2_003
IL_10167.6
IL_7WTM_0231/C2/411:413,
1/C2/420:422		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.3
IL_7WTM_0241/C2/439:441,
1/C2/463:464		Single bulged U
geometric
IL_4V88_407
NA
IL_7WTM_0251/C2/443:447,
1/C2/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7WTM_0261/C2/447:448,
1/C2/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7WTM_0271/C2/481:482,
1/C2/505:507		Single bulged A
geometric
IL_4V88_409
NA
IL_7WTM_0281/C2/514:516,
1/C2/536:543		No text annotation
IL_7WTM_0291/C2/517:518,
1/C2/533:535		Minor groove platform
geometric
IL_4V88_388
NA
IL_7WTM_0301/C2/518:520,
1/C2/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_7WTM_0311/C2/550:557,
1/C2/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7WTM_0321/C2/557:559,
1/C2/586:587		Single bulged U
geometric
IL_3TZR_002
IL_89505.4
IL_7WTM_0331/C2/562:563,
1/C2/580:583		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7WTM_0341/C2/563:564,
1/C2/578:580		No text annotation
IL_7WTM_0351/C2/566:568,
1/C2/575:576		Single bulged A
geometric
IL_4R4V_004
IL_31462.7
IL_7WTM_0581/C2/616:622,
1/C2/1104:1105		No text annotation
homologous
IL_8C3A_426
NA
IL_7WTM_0361/C2/624:626,
1/C2/973:975		Isolated non-canonical cWW pair
geometric
IL_4V88_417
NA
IL_7WTM_0371/C2/627:631,
1/C2/968:972		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7WTM_0381/C2/646:648,
1/C2/686:688		Isolated cWS basepair
geometric
IL_5TBW_047
NA
IL_7WTM_0391/C2/703:705,
1/C2/734:735		No text annotation
IL_7WTM_0401/C2/746:747,
1/C2/802:805		Major groove minor groove platform; mini C-loop
geometric
IL_4V88_423
NA
IL_7WTM_0411/C2/748:750,
1/C2/799:801		Isolated non-canonical cWW pair
geometric
IL_4V88_424
NA
IL_7WTM_0421/C2/751:759,
1/C2/791:798		No text annotation
geometric
IL_4V88_425
NA
IL_7WTM_0431/C2/819:822,
1/C2/850:852		Isolated non-canonical cWW pair
geometric
IL_4V88_426
NA
IL_7WTM_0441/C2/865:866,
1/C2/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7WTM_0451/C2/868:869,
1/C2/958:960		Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_7WTM_0591/C2/871:873,
1/C2/954:956		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_7WTM_0471/C2/874:878,
1/C2/950:953		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7WTM_0481/C2/885:888,
1/C2/924:927		Tandem non-canonical cWW pairs
geometric
IL_4V88_432
NA
IL_7WTM_0491/C2/893:895,
1/C2/917:919		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_87907.2
IL_7WTM_0601/C2/893:899,
1/C2/910:919		No text annotation
homologous
IL_8P9A_422
IL_57741.1
IL_7WTM_0501/C2/895:899,
1/C2/910:917		Kink-turn
geometric
IL_4V88_434
NA
IL_7WTM_0511/C2/985:990,
1/C2/1014:1016		Other IL
geometric
IL_4V88_435
NA
IL_7WTM_0521/C2/990:994,
1/C2/1010:1014		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_7WTM_0531/C2/1034:1036,
1/C2/1095:1101		No text annotation
geometric
IL_4V88_437
NA
IL_7WTM_0541/C2/1041:1044,
1/C2/1074:1077		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7WTM_0551/C2/1051:1053,
1/C2/1066:1067		Single bulged U
geometric
IL_4V88_439
NA
IL_7WTM_0561/C2/1111:1118,
1/C2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4V88_440
NA

Problematic loops

#loop idProblemSequence
IL_7WTM_013No text annotation
IL_7WTM_057Isolated non-canonical cWW pair
IL_7WTM_046Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7WTM_0011/C2/41:42,
1/C2/433:439,
1/C2/464:466		No text annotation
geometric
J3_4V88_078
NA
J3_7WTM_0061/C2/41:48,
1/C2/431:439,
1/C2/464:466		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_7WTM_0071/C2/213:228,
1/C2/237:243,
1/C2/250:252		No text annotation
J3_7WTM_0021/C2/633:635,
1/C2/861:865,
1/C2/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_7WTM_0081/C2/633:635,
1/C2/861:866,
1/C2/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_7WTM_0031/C2/760:763,
1/C2/773:775,
1/C2/785:790		No text annotation
homologous
J3_8C3A_035
NA
J3_7WTM_0041/C2/881:884,
1/C2/928:936,
1/C2/943:947		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7WTM_0051/C2/1037:1039,
1/C2/1079:1083,
1/C2/1090:1094		No text annotation
homologous
J3_8C3A_037
NA
J4_7WTM_0011/C2/99:107,
1/C2/307:309,
1/C2/357:361,
1/C2/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_7WTM_0021/C2/622:624,
1/C2/975:980,
1/C2/1021:1032,
1/C2/1103:1104		No text annotation
homologous
J4_8C3A_022
NA
J5_7WTM_0011/C2/31:35,
1/C2/473:479,
1/C2/509:514,
1/C2/543:546,
1/C2/592:595		No text annotation
homologous
J5_8C3A_018
NA
J5_7WTM_0021/C2/54:57,
1/C2/90:97,
1/C2/386:388,
1/C2/409:411,
1/C2/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_7WTM_0041/C2/636:641,
1/C2/693:698,
1/C2/740:744,
1/C2/807:817,
1/C2/854:860		No text annotation

Problematic loops

#loop idProblemSequence
J5_7WTM_003No text annotation

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