HL_7WTM_018

3D structure

PDB id

7WTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Dis-E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

7WTM|1|C2|U|779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTM_018 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1285

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7WTM|1|C2|C|777
7WTM|1|C2|G|778
7WTM|1|C2|U|779
7WTM|1|C2|A|780
7WTM|1|C2|U|781
7WTM|1|C2|U|782
7WTM|1|C2|G|783

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SY

40S ribosomal protein S24-A