HL_7WTN_023

3D structure

PDB id

7WTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTN_023 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.4249

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7WTN|1|C2|U|1055
7WTN|1|C2|U|1056
7WTN|1|C2|U|1057
7WTN|1|C2|U|1058
7WTN|1|C2|U|1059
7WTN|1|C2|U|1060
7WTN|1|C2|A|1061
7WTN|1|C2|A|1062
7WTN|1|C2|U|1063
7WTN|1|C2|G|1064

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain Sb

40S ribosomal protein S27-A