HL_7WTO_009

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_009 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1957

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTO|1|C2|U|368
7WTO|1|C2|A|369
7WTO|1|C2|A|370
7WTO|1|C2|G|371
7WTO|1|C2|G|372
7WTO|1|C2|G|373

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SL

40S ribosomal protein S11-A

Chain SW

40S ribosomal protein S22-A