HL_7WTO_028

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7WTO|1|C2|U|158, 7WTO|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTO_028 not in the Motif Atlas

Homologous match to HL_8P9A_192

Geometric discrepancy: 0.2137

The information below is about HL_8P9A_192

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7WTO|1|C2|G|154
7WTO|1|C2|U|155
7WTO|1|C2|A|156
7WTO|1|C2|A|157
7WTO|1|C2|U|158
7WTO|1|C2|U|159
7WTO|1|C2|C|160

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A