HL_7WTQ_025

3D structure

PDB id

7WTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTQ_025 not in the Motif Atlas

Geometric match to HL_5M0J_002

Geometric discrepancy: 0.0893

The information below is about HL_5M0J_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7WTQ|1|C2|C|1121
7WTQ|1|C2|G|1122
7WTQ|1|C2|C|1123
7WTQ|1|C2|A|1124
7WTQ|1|C2|A|1125
7WTQ|1|C2|G|1126

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1