HL_7WTR_003

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7WTR|1|C2|U|158, 7WTR|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTR_003 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2012

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7WTR|1|C2|G|154
7WTR|1|C2|U|155
7WTR|1|C2|A|156
7WTR|1|C2|A|157
7WTR|1|C2|U|158
7WTR|1|C2|U|159
7WTR|1|C2|C|160

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A