7WTR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7WTR_001 | 1/C2/7:17 | No text annotation | ||
| HL_7WTR_003 | 1/C2/154:160 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_7WTR_028 | 1/C2/186:199 | No text annotation | ||
| HL_7WTR_004 | 1/C2/190:195 | No text annotation | ||
| HL_7WTR_005 | 1/C2/230:235 | No text annotation | geometric HL_4V88_190 NA | |
| HL_7WTR_006 | 1/C2/243:250 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7WTR_007 | 1/C2/276:279 | Mini UNCG | geometric HL_4V88_192 NA | |
| HL_7WTR_008 | 1/C2/330:338 | GNRA related | geometric HL_4V88_193 NA | |
| HL_7WTR_009 | 1/C2/368:373 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7WTR_010 | 1/C2/393:404 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7WTR_011 | 1/C2/414:419 | UNCG | geometric HL_4V88_196 NA | |
| HL_7WTR_012 | 1/C2/450:456 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7WTR_014 | 1/C2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7WTR_015 | 1/C2/569:574 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7WTR_016 | 1/C2/716:722 | No text annotation | ||
| HL_7WTR_017 | 1/C2/764:772 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7WTR_018 | 1/C2/777:783 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7WTR_019 | 1/C2/829:843 | Pseudoknot geometry | geometric HL_4V88_205 NA | |
| HL_7WTR_020 | 1/C2/900:909 | No text annotation | geometric HL_4V88_206 NA | |
| HL_7WTR_021 | 1/C2/937:942 | GNRA | geometric HL_4V88_207 NA | |
| HL_7WTR_022 | 1/C2/997:1007 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_7WTR_023 | 1/C2/1055:1064 | No text annotation | geometric HL_4V88_209 NA | |
| HL_7WTR_024 | 1/C2/1084:1089 | GNRA | geometric HL_4V88_210 NA | |
| HL_7WTR_025 | 1/C2/1121:1126 | GNRA | geometric HL_4LFB_020 HL_37824.8 | |
| HL_7WTR_026 | 1/C2/1698:1703 | No text annotation | ||
| HL_7WTR_027 | 1/C2/1778:1783 | No text annotation | geometric HL_4V9F_003 HL_75660.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7WTR_002 | No text annotation | ||
| HL_7WTR_013 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7WTR_001 | 1/C2/24:26, 1/C2/600:601 | Single bulged C | geometric IL_4V88_384 NA | |
| IL_7WTR_002 | 1/C2/35:37, 1/C2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7WTR_003 | 1/C2/37:41, 1/C2/466:471 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7WTR_004 | 1/C2/42:48, 1/C2/431:433 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7WTR_005 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform | geometric IL_4LFB_004 IL_51454.3 | |
| IL_7WTR_006 | 1/C2/58:63, 1/C2/87:89 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7WTR_007 | 1/C2/64:69, 1/C2/82:86 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7WTR_008 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs | geometric IL_4V88_391 NA | |
| IL_7WTR_009 | 1/C2/113:116, 1/C2/300:301 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7WTR_010 | 1/C2/117:122, 1/C2/295:299 | No text annotation | geometric IL_4V88_393 NA | |
| IL_7WTR_011 | 1/C2/144:149, 1/C2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_7WTR_012 | 1/C2/150:152, 1/C2/162:164 | Isolated non-canonical cWW contact | geometric IL_1SI2_002 IL_44465.1 | |
| IL_7WTR_013 | 1/C2/186:190, 1/C2/195:199 | No text annotation | ||
| IL_7WTR_014 | 1/C2/204:206, 1/C2/259:263 | Major groove platform with extra cWW | geometric IL_4V88_397 NA | |
| IL_7WTR_015 | 1/C2/206:208, 1/C2/257:259 | Isolated non-canonical cWW pair | geometric IL_3U4M_001 IL_28037.2 | |
| IL_7WTR_016 | 1/C2/265:267, 1/C2/288:289 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7WTR_017 | 1/C2/270:273, 1/C2/283:285 | No text annotation | geometric IL_4V88_400 NA | |
| IL_7WTR_077 | 1/C2/275:276, 1/C2/279:281 | No text annotation | homologous IL_8CRE_407 IL_89505.4 | |
| IL_7WTR_019 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_7WTR_020 | 1/C2/318:323, 1/C2/345:346 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_7WTR_021 | 1/C2/363:365, 1/C2/376:381 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7WTR_022 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7WTR_023 | 1/C2/411:413, 1/C2/420:422 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.3 | |
| IL_7WTR_024 | 1/C2/439:441, 1/C2/463:464 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_7WTR_025 | 1/C2/443:447, 1/C2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7WTR_026 | 1/C2/447:448, 1/C2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_7WTR_027 | 1/C2/481:482, 1/C2/505:507 | Single bulged A | geometric IL_4R4V_003 IL_31462.7 | |
| IL_7WTR_028 | 1/C2/514:516, 1/C2/536:543 | No text annotation | ||
| IL_7WTR_029 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7WTR_030 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7WTR_031 | 1/C2/550:557, 1/C2/587:588 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_7WTR_032 | 1/C2/557:559, 1/C2/586:587 | Single bulged U | geometric IL_4FRG_002 IL_89505.4 | |
| IL_7WTR_033 | 1/C2/562:563, 1/C2/580:583 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7WTR_034 | 1/C2/563:564, 1/C2/578:580 | Single bulged A | geometric IL_7A0S_002 IL_31462.7 | |
| IL_7WTR_035 | 1/C2/566:568, 1/C2/575:576 | Single bulged A | geometric IL_5TBW_060 NA | |
| IL_7WTR_073 | 1/C2/616:622, 1/C2/1104:1105 | No text annotation | homologous IL_8P9A_405 IL_38186.6 | |
| IL_7WTR_036 | 1/C2/624:626, 1/C2/973:975 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_7WTR_037 | 1/C2/627:631, 1/C2/968:972 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7WTR_038 | 1/C2/646:648, 1/C2/686:688 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_87907.2 | |
| IL_7WTR_039 | 1/C2/652:657, 1/C2/677:682 | No text annotation | ||
| IL_7WTR_040 | 1/C2/703:705, 1/C2/733:735 | Isolated cWH basepair | geometric IL_4KQ0_003 IL_10167.6 | |
| IL_7WTR_041 | 1/C2/705:708, 1/C2/730:733 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_7WTR_042 | 1/C2/709:712, 1/C2/726:729 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_77658.1 | |
| IL_7WTR_074 | 1/C2/746:747, 1/C2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_7WTR_044 | 1/C2/748:750, 1/C2/799:801 | Isolated non-canonical cWW pair | geometric IL_3BNR_007 IL_28037.2 | |
| IL_7WTR_045 | 1/C2/751:759, 1/C2/791:798 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7WTR_046 | 1/C2/819:822, 1/C2/850:852 | Isolated non-canonical cWW pair | geometric IL_5WTI_002 IL_28037.2 | |
| IL_7WTR_047 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7WTR_048 | 1/C2/868:869, 1/C2/958:960 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_7WTR_075 | 1/C2/871:873, 1/C2/954:956 | Isolated non-canonical cWW pair | geometric IL_8D29_001 IL_87907.2 | |
| IL_7WTR_050 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7WTR_051 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7WTR_052 | 1/C2/893:895, 1/C2/917:919 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_7WTR_076 | 1/C2/893:899, 1/C2/910:919 | No text annotation | homologous IL_8P9A_422 IL_57741.1 | |
| IL_7WTR_053 | 1/C2/895:899, 1/C2/910:917 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7WTR_054 | 1/C2/985:990, 1/C2/1014:1016 | Other IL | geometric IL_4V88_435 NA | |
| IL_7WTR_055 | 1/C2/990:994, 1/C2/1010:1014 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7WTR_056 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7WTR_057 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7WTR_058 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U | geometric IL_4V88_439 NA | |
| IL_7WTR_059 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7WTR_060 | 1/C2/1148:1152, 1/C2/1626:1629 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_7WTR_061 | 1/C2/1637:1642, 1/C2/1759:1767 | No text annotation | ||
| IL_7WTR_062 | 1/C2/1642:1644, 1/C2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_7WTR_078 | 1/C2/1644:1647, 1/C2/1753:1757 | No text annotation | geometric IL_7R9F_001 IL_25872.4 | |
| IL_7WTR_064 | 1/C2/1650:1652, 1/C2/1748:1750 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10167.6 | |
| IL_7WTR_065 | 1/C2/1653:1656, 1/C2/1745:1747 | No text annotation | ||
| IL_7WTR_066 | 1/C2/1665:1667, 1/C2/1734:1736 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_87907.2 | |
| IL_7WTR_067 | 1/C2/1669:1672, 1/C2/1729:1732 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7WTR_068 | 1/C2/1672:1674, 1/C2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_7WTR_069 | 1/C2/1675:1678, 1/C2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_77658.1 | |
| IL_7WTR_070 | 1/C2/1678:1682, 1/C2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_7WTR_071 | 1/C2/1688:1690, 1/C2/1711:1713 | Isolated non-canonical cWW pair | geometric IL_4P3U_012 IL_87907.2 | |
| IL_7WTR_072 | 1/C2/1693:1695, 1/C2/1706:1708 | Isolated non-canonical cWW pair | geometric IL_4ZC7_001 IL_87907.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7WTR_018 | Isolated cWH basepair | ||
| IL_7WTR_043 | Major groove minor groove platform with extra cWW | ||
| IL_7WTR_049 | Tandem non-canonical cWW pairs | ||
| IL_7WTR_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7WTR_001 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_7WTR_006 | 1/C2/41:48, 1/C2/431:439, 1/C2/464:466 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_7WTR_007 | 1/C2/213:228, 1/C2/237:243, 1/C2/250:252 | No text annotation | ||
| J3_7WTR_002 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7WTR_008 | 1/C2/633:635, 1/C2/861:866, 1/C2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7WTR_003 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7WTR_004 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_7WTR_005 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation | homologous J3_8C3A_037 NA | |
| J4_7WTR_001 | 1/C2/99:107, 1/C2/307:309, 1/C2/357:361, 1/C2/383:384 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_7WTR_002 | 1/C2/622:624, 1/C2/975:980, 1/C2/1021:1032, 1/C2/1103:1104 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_7WTR_001 | 1/C2/31:35, 1/C2/473:479, 1/C2/509:514, 1/C2/543:546, 1/C2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7WTR_002 | 1/C2/54:57, 1/C2/90:97, 1/C2/386:388, 1/C2/409:411, 1/C2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7WTR_003 | 1/C2/636:641, 1/C2/693:699, 1/C2/739:744, 1/C2/807:817, 1/C2/854:860 | No text annotation |
Problematic loops
No problematic loops
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