HL_7WTR_011

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7WTR|1|C2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTR_011 not in the Motif Atlas

Geometric match to HL_4V88_196

Geometric discrepancy: 0.275

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7WTR|1|C2|C|414
7WTR|1|C2|C|415
7WTR|1|C2|A|416
7WTR|1|C2|A|417
7WTR|1|C2|G|418
7WTR|1|C2|G|419

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein TSR1

Chain SG

40S ribosomal protein S6-A