HL_7WTR_014
3D structure
- PDB id
- 7WTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7WTR_014 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1464
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7WTR|1|C2|A|520
7WTR|1|C2|A|521
7WTR|1|C2|U|522
7WTR|1|C2|G|523
7WTR|1|C2|U|524
7WTR|1|C2|A|525
7WTR|1|C2|A|526
7WTR|1|C2|A|527
7WTR|1|C2|U|528
7WTR|1|C2|A|529
7WTR|1|C2|C|530
7WTR|1|C2|C|531
7WTR|1|C2|U|532
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CC
- Ribosome biogenesis protein TSR1
- Chain SE
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S24-A
Coloring options: