HL_7WTR_022

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7WTR|1|C2|A|1005, 7WTR|1|C2|C|1006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTR_022 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.298

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7WTR|1|C2|G|997
7WTR|1|C2|A|998
7WTR|1|C2|U|999
7WTR|1|C2|C|1000
7WTR|1|C2|A|1001
7WTR|1|C2|G|1002
7WTR|1|C2|A|1003
7WTR|1|C2|U|1004
7WTR|1|C2|A|1005
7WTR|1|C2|C|1006
7WTR|1|C2|C|1007

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CA

Pre-rRNA-processing protein PNO1

Chain SO

40S ribosomal protein S14-A