HL_7WTS_026

3D structure

PDB id

7WTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7WTS|1|2|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTS_026 not in the Motif Atlas

Geometric match to HL_4V88_219

Geometric discrepancy: 0.2239

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7WTS|1|2|A|1614
7WTS|1|2|U|1615
7WTS|1|2|U|1616
7WTS|1|2|G|1617
7WTS|1|2|C|1618
7WTS|1|2|A|1619
7WTS|1|2|A|1620
7WTS|1|2|U|1621
7WTS|1|2|U|1622
7WTS|1|2|A|1623
7WTS|1|2|U|1624
7WTS|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains