HL_7WTT_019

3D structure

PDB id

7WTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTT_019 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.0903

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7WTT|1|2|G|1054
7WTT|1|2|A|1055
7WTT|1|2|U|1056
7WTT|1|2|A|1062
7WTT|1|2|C|1063
7WTT|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1