HL_7WTU_011

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTU_011 not in the Motif Atlas

Geometric match to HL_4QK9_002

Geometric discrepancy: 0.1369

The information below is about HL_4QK9_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7WTU|1|2|C|539
7WTU|1|2|U|540
7WTU|1|2|U|541
7WTU|1|2|U|542
7WTU|1|2|C|543
7WTU|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein