7WTU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7WTU_001 | 1/2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7WTU_002 | 1/2/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_7WTU_003 | 1/2/156:162 | GNRA related | geometric HL_4V88_188 NA | |
| HL_7WTU_004 | 1/2/197:202 | GNRA | geometric HL_3RG5_007 HL_37824.7 | |
| HL_7WTU_005 | 1/2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_7WTU_006 | 1/2/377:387 | No text annotation | ||
| HL_7WTU_007 | 1/2/416:421 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7WTU_008 | 1/2/441:452 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7WTU_009 | 1/2/462:467 | UNCG | geometric HL_4V88_196 NA | |
| HL_7WTU_010 | 1/2/498:504 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7WTU_011 | 1/2/539:544 | GNRA | geometric HL_4QK9_002 HL_37824.7 | |
| HL_7WTU_012 | 1/2/569:581 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7WTU_014 | 1/2/820:828 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7WTU_031 | 1/2/885:901 | No text annotation | ||
| HL_7WTU_017 | 1/2/957:966 | No text annotation | geometric HL_4V88_206 NA | |
| HL_7WTU_018 | 1/2/994:999 | GNRA | geometric HL_4V88_207 NA | |
| HL_7WTU_020 | 1/2/1113:1120 | No text annotation | ||
| HL_7WTU_021 | 1/2/1141:1146 | GNRA | geometric HL_4V88_210 NA | |
| HL_7WTU_022 | 1/2/1178:1183 | GNRA | geometric HL_4Y1M_002 HL_37824.7 | |
| HL_7WTU_023 | 1/2/1295:1304 | No text annotation | geometric HL_7MLW_003 HL_84299.4 | |
| HL_7WTU_032 | 1/2/1366:1373 | No text annotation | homologous HL_8CRE_219 HL_77436.5 | |
| HL_7WTU_026 | 1/2/1460:1466 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_7WTU_027 | 1/2/1565:1570 | GNRA | geometric HL_3E5C_002 HL_37824.7 | |
| HL_7WTU_028 | 1/2/1614:1625 | No text annotation | geometric HL_4V88_219 NA | |
| HL_7WTU_029 | 1/2/1659:1665 | No text annotation | ||
| HL_7WTU_030 | 1/2/1847:1852 | No text annotation | geometric HL_4LX6_002 HL_31585.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7WTU_013 | No text annotation | ||
| HL_7WTU_015 | No text annotation | ||
| HL_7WTU_016 | No text annotation | ||
| HL_7WTU_019 | No text annotation | ||
| HL_7WTU_024 | No text annotation | ||
| HL_7WTU_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7WTU_001 | 1/2/23:25, 1/2/649:651 | Isolated non-canonical cWW pair | geometric IL_1KFO_002 IL_87907.2 | |
| IL_7WTU_002 | 1/2/34:36, 1/2/519:521 | Isolated cWH basepair | geometric IL_4KQ0_003 IL_10167.6 | |
| IL_7WTU_003 | 1/2/37:40, 1/2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_7WTU_004 | 1/2/41:47, 1/2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7WTU_005 | 1/2/49:51, 1/2/476:477 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7WTU_006 | 1/2/57:62, 1/2/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7WTU_007 | 1/2/63:68, 1/2/81:85 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7WTU_008 | 1/2/108:110, 1/2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_28037.2 | |
| IL_7WTU_009 | 1/2/110:112, 1/2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_7WTU_010 | 1/2/112:115, 1/2/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7WTU_011 | 1/2/116:121, 1/2/343:347 | No text annotation | geometric IL_4V88_393 NA | |
| IL_7WTU_013 | 1/2/145:151, 1/2/167:174 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_7WTU_014 | 1/2/152:154, 1/2/164:166 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_7WTU_015 | 1/2/188:192, 1/2/207:211 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_7WTU_016 | 1/2/216:219, 1/2/302:309 | No text annotation | geometric IL_1GID_008 NA | |
| IL_7WTU_018 | 1/2/312:314, 1/2/336:337 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7WTU_019 | 1/2/317:319, 1/2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7WTU_020 | 1/2/359:364, 1/2/396:403 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_7WTU_021 | 1/2/366:371, 1/2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_7WTU_022 | 1/2/411:413, 1/2/424:429 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7WTU_023 | 1/2/437:439, 1/2/454:456 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7WTU_024 | 1/2/459:461, 1/2/468:470 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.3 | |
| IL_7WTU_025 | 1/2/487:489, 1/2/511:512 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7WTU_026 | 1/2/491:495, 1/2/508:509 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_7WTU_027 | 1/2/495:496, 1/2/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_7WTU_028 | 1/2/529:530, 1/2/554:556 | Single bulged A | geometric IL_4V9F_002 IL_31462.6 | |
| IL_7WTU_029 | 1/2/535:537, 1/2/546:549 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_7WTU_030 | 1/2/563:565, 1/2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7WTU_031 | 1/2/566:569, 1/2/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_7WTU_032 | 1/2/599:606, 1/2/636:637 | Multiple bulged bases | geometric IL_6DLR_004 IL_66635.5 | |
| IL_7WTU_033 | 1/2/606:608, 1/2/635:636 | Single bulged U | geometric IL_6UFG_004 IL_89505.4 | |
| IL_7WTU_034 | 1/2/611:613, 1/2/630:632 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_7WTU_035 | 1/2/663:665, 1/2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_7WTU_036 | 1/2/665:671, 1/2/1161:1162 | No text annotation | geometric IL_5J7L_026 IL_38186.6 | |
| IL_7WTU_037 | 1/2/673:675, 1/2/1030:1032 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
| IL_7WTU_038 | 1/2/676:680, 1/2/1025:1029 | UAA/GAN with extra pair | geometric IL_7RQB_074 NA | |
| IL_7WTU_039 | 1/2/747:750, 1/2/793:795 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_7WTU_040 | 1/2/802:803, 1/2/860:863 | Major groove minor groove platform; mini C-loop | geometric IL_4V88_423 NA | |
| IL_7WTU_041 | 1/2/805:807, 1/2/856:858 | Isolated non-canonical cWW pair | geometric IL_3U4M_001 IL_28037.2 | |
| IL_7WTU_042 | 1/2/807:815, 1/2/849:856 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7WTU_043 | 1/2/874:876, 1/2/910:912 | Isolated non-canonical cWW pair | geometric IL_5MWI_006 NA | |
| IL_7WTU_044 | 1/2/877:879, 1/2/907:909 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_7WTU_045 | 1/2/922:923, 1/2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7WTU_046 | 1/2/925:927, 1/2/1014:1017 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_57744.1 | |
| IL_7WTU_047 | 1/2/928:931, 1/2/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7WTU_048 | 1/2/931:935, 1/2/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7WTU_049 | 1/2/943:945, 1/2/981:983 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_7WTU_050 | 1/2/952:956, 1/2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7WTU_051 | 1/2/1042:1047, 1/2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_7WTU_052 | 1/2/1047:1051, 1/2/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7WTU_053 | 1/2/1091:1093, 1/2/1152:1158 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7WTU_054 | 1/2/1098:1101, 1/2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 IL_85033.2 | |
| IL_7WTU_055 | 1/2/1101:1103, 1/2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_87907.2 | |
| IL_7WTU_056 | 1/2/1108:1110, 1/2/1123:1124 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7WTU_057 | 1/2/1168:1175, 1/2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7WTU_058 | 1/2/1206:1207, 1/2/1692:1696 | No text annotation | ||
| IL_7WTU_059 | 1/2/1214:1217, 1/2/1681:1685 | C-loop | geometric IL_4V88_443 NA | |
| IL_7WTU_060 | 1/2/1230:1232, 1/2/1526:1528 | Isolated non-canonical cWW pair | geometric IL_4V88_444 NA | |
| IL_7WTU_061 | 1/2/1235:1236, 1/2/1521:1523 | Minor groove platform | geometric IL_6DTD_003 IL_51454.3 | |
| IL_7WTU_063 | 1/2/1264:1266, 1/2/1516:1517 | Minor groove platform related | geometric IL_7TZS_003 IL_51454.3 | |
| IL_7WTU_064 | 1/2/1282:1287, 1/2/1314:1315 | No text annotation | ||
| IL_7WTU_092 | 1/2/1282:1290, 1/2/1309:1315 | No text annotation | ||
| IL_7WTU_065 | 1/2/1287:1290, 1/2/1309:1314 | No text annotation | ||
| IL_7WTU_066 | 1/2/1291:1293, 1/2/1306:1308 | No text annotation | geometric IL_4V88_448 NA | |
| IL_7WTU_067 | 1/2/1325:1327, 1/2/1502:1503 | Single bulged U | geometric IL_3TZR_002 IL_89505.4 | |
| IL_7WTU_068 | 1/2/1329:1331, 1/2/1497:1500 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_7WTU_069 | 1/2/1332:1334, 1/2/1493:1496 | No text annotation | ||
| IL_7WTU_070 | 1/2/1337:1338, 1/2/1488:1490 | Single bulged A | geometric IL_5J7L_039 IL_31462.6 | |
| IL_7WTU_071 | 1/2/1363:1365, 1/2/1374:1375 | Minor groove platform | geometric IL_2QWY_009 IL_51454.3 | |
| IL_7WTU_072 | 1/2/1387:1389, 1/2/1481:1482 | Single bulged A | geometric IL_9DFE_032 IL_31462.6 | |
| IL_7WTU_073 | 1/2/1395:1399, 1/2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_4V88_429 NA | |
| IL_7WTU_074 | 1/2/1537:1539, 1/2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 IL_28037.2 | |
| IL_7WTU_093 | 1/2/1541:1550, 1/2/1582:1592 | No text annotation | ||
| IL_7WTU_076 | 1/2/1560:1562, 1/2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
| IL_7WTU_077 | 1/2/1604:1610, 1/2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7WTU_079 | 1/2/1706:1708, 1/2/1826:1828 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_28037.2 | |
| IL_7WTU_080 | 1/2/1708:1711, 1/2/1822:1826 | No text annotation | ||
| IL_7WTU_081 | 1/2/1714:1716, 1/2/1817:1819 | Isolated non-canonical cWW contact | geometric IL_1SI2_002 IL_44465.1 | |
| IL_7WTU_082 | 1/2/1717:1720, 1/2/1813:1816 | Double sheared | geometric IL_7RQB_089 NA | |
| IL_7WTU_094 | 1/2/1720:1722, 1/2/1812:1813 | No text annotation | ||
| IL_7WTU_084 | 1/2/1729:1731, 1/2/1803:1805 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
| IL_7WTU_085 | 1/2/1733:1736, 1/2/1798:1801 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7WTU_086 | 1/2/1739:1741, 1/2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_7WTU_087 | 1/2/1742:1746, 1/2/1788:1792 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7WTU_088 | 1/2/1750:1751, 1/2/1782:1784 | Single bulged C | geometric IL_5TBW_002 NA | |
| IL_7WTU_089 | 1/2/1751:1752, 1/2/1780:1782 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7WTU_090 | 1/2/1756:1759, 1/2/1774:1776 | No text annotation | ||
| IL_7WTU_091 | 1/2/1760:1761, 1/2/1771:1773 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7WTU_012 | No text annotation | ||
| IL_7WTU_017 | No text annotation | ||
| IL_7WTU_062 | No text annotation | ||
| IL_7WTU_075 | No text annotation | ||
| IL_7WTU_078 | No text annotation | ||
| IL_7WTU_083 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7WTU_001 | 1/2/40:41, 1/2/481:487, 1/2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7WTU_011 | 1/2/40:47, 1/2/479:487, 1/2/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_7WTU_002 | 1/2/682:684, 1/2/918:922, 1/2/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
| J3_7WTU_014 | 1/2/682:684, 1/2/918:923, 1/2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_7WTU_003 | 1/2/816:819, 1/2/829:831, 1/2/843:848 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7WTU_004 | 1/2/938:941, 1/2/985:993, 1/2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_7WTU_005 | 1/2/1094:1096, 1/2/1136:1140, 1/2/1147:1151 | No text annotation | ||
| J3_7WTU_006 | 1/2/1218:1221, 1/2/1645:1651, 1/2/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7WTU_007 | 1/2/1225:1228, 1/2/1530:1532, 1/2/1638:1641 | No text annotation | ||
| J3_7WTU_009 | 1/2/1391:1395, 1/2/1450:1456, 1/2/1470:1479 | No text annotation | ||
| J3_7WTU_010 | 1/2/1532:1536, 1/2/1597:1604, 1/2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_7WTU_001 | 1/2/98:106, 1/2/355:357, 1/2/405:409, 1/2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_7WTU_002 | 1/2/671:673, 1/2/1032:1037, 1/2/1078:1089, 1/2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_7WTU_001 | 1/2/30:34, 1/2/521:527, 1/2/558:563, 1/2/592:595, 1/2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7WTU_002 | 1/2/30:34, 1/2/521:527, 1/2/558:565, 1/2/585:595, 1/2/641:644 | No text annotation | ||
| J5_7WTU_003 | 1/2/53:56, 1/2/89:96, 1/2/434:436, 1/2/457:459, 1/2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7WTU_004 | 1/2/123:130, 1/2/182:185, 1/2/214:215, 1/2/310:312, 1/2/337:341 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7WTU_012 | No text annotation | ||
| J3_7WTU_013 | No text annotation | ||
| J3_7WTU_008 | No text annotation |
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