HL_7WTU_018

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTU_018 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.1009

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7WTU|1|2|C|994
7WTU|1|2|G|995
7WTU|1|2|A|996
7WTU|1|2|A|997
7WTU|1|2|A|998
7WTU|1|2|G|999

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain x

RNA-binding protein PNO1