HL_7WTV_023

3D structure

PDB id

7WTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7WTV|1|2|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTV_023 not in the Motif Atlas

Geometric match to HL_5T83_003

Geometric discrepancy: 0.39

The information below is about HL_5T83_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7WTV|1|2|A|1295
7WTV|1|2|U|1296
7WTV|1|2|U|1297
7WTV|1|2|G|1298
7WTV|1|2|A|1299
7WTV|1|2|U|1300
7WTV|1|2|A|1301
7WTV|1|2|G|1302
7WTV|1|2|C|1303
7WTV|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain w

Bystin