RNA 3D Hub //

7WTV Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7WTV_0011/2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7WTV_0021/2/69:80No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_7WTV_0031/2/156:162GNRA related
geometric
HL_4V88_188
NA
HL_7WTV_0051/2/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7WTV_0061/2/377:387No text annotation
HL_7WTV_0071/2/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7WTV_0081/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7WTV_0091/2/462:467UNCG
geometric
HL_5Y85_004
HL_61337.3
HL_7WTV_0101/2/498:504No text annotation
geometric
HL_5TBW_006
NA
HL_7WTV_0121/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7WTV_0141/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7WTV_0171/2/957:966No text annotation
geometric
HL_4V88_206
NA
HL_7WTV_0181/2/994:999GNRA
geometric
HL_4V88_207
NA
HL_7WTV_0201/2/1113:1120No text annotation
HL_7WTV_0211/2/1141:1146GNRA
geometric
HL_4V88_210
NA
HL_7WTV_0221/2/1178:1183GNRA
geometric
HL_4V88_211
NA
HL_7WTV_0271/2/1565:1570GNRA
geometric
HL_3E5C_002
HL_34789.4
HL_7WTV_0281/2/1614:1625No text annotation
geometric
HL_4V88_219
NA

Problematic loops

#loop idProblemSequence
HL_7WTV_004GNRA
HL_7WTV_011GNRA
HL_7WTV_013No text annotation
HL_7WTV_015No text annotation
HL_7WTV_016No text annotation
HL_7WTV_032No text annotation
HL_7WTV_019No text annotation
HL_7WTV_023T-loop related
HL_7WTV_033No text annotation
HL_7WTV_024No text annotation
HL_7WTV_025No text annotation
HL_7WTV_026No text annotation
HL_7WTV_029No text annotation
HL_7WTV_030No text annotation
HL_7WTV_031Pseudoknot geometry

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7WTV_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_4KNQ_004
NA
IL_7WTV_0021/2/34:36,
1/2/519:521		Isolated cWH basepair
geometric
IL_3R1C_032
NA
IL_7WTV_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.2
IL_7WTV_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7WTV_0051/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4LFB_004
IL_34520.3
IL_7WTV_0061/2/57:62,
1/2/86:88		No text annotation
geometric
IL_4V88_389
NA
IL_7WTV_0071/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7WTV_0081/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_1ZX7_004
NA
IL_7WTV_0091/2/110:112,
1/2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.3
IL_7WTV_0101/2/112:115,
1/2/348:349		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7WTV_0111/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7WTV_0131/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7WTV_0141/2/152:154,
1/2/164:166		Isolated cWH basepair
geometric
IL_3CZW_001
IL_10892.2
IL_7WTV_0151/2/188:192,
1/2/207:211		Double sheared with non-canonical cWW
geometric
IL_4WFL_001
IL_87767.2
IL_7WTV_0161/2/216:219,
1/2/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_7WTV_0181/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7WTV_0191/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_7WTV_0201/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7WTV_0211/2/366:371,
1/2/393:394		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_7WTV_0221/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7WTV_0231/2/437:439,
1/2/454:456		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_7WTV_0241/2/459:461,
1/2/468:470		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.5
IL_7WTV_0251/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.3
IL_7WTV_0261/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
NA
IL_7WTV_0271/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7WTV_0281/2/529:530,
1/2/554:556		Single bulged A
geometric
IL_4V9F_002
IL_14190.2
IL_7WTV_0301/2/563:565,
1/2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7WTV_0311/2/566:569,
1/2/581:584		Tandem non-canonical cWW pairs
geometric
IL_5C5W_001
IL_71194.2
IL_7WTV_0321/2/599:606,
1/2/636:637		No text annotation
IL_7WTV_0331/2/606:608,
1/2/635:636		Single bulged U
geometric
IL_6UFG_004
IL_97561.3
IL_7WTV_0341/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_01003.3
IL_7WTV_0351/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_5J7L_026
NA
IL_7WTV_0361/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
NA
IL_7WTV_0371/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
geometric
IL_6CZR_145
NA
IL_7WTV_0911/2/676:681,
1/2/1024:1029		No text annotation
geometric
IL_4QLM_002
IL_74322.2
IL_7WTV_0391/2/802:803,
1/2/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_4PDB_002
IL_73108.2
IL_7WTV_0401/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_1ZH5_001
IL_01003.3
IL_7WTV_0411/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7WTV_0421/2/874:876,
1/2/910:912		Isolated non-canonical cWW pair
geometric
IL_4V88_417
NA
IL_7WTV_0441/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7WTV_0451/2/925:927,
1/2/1014:1017		Isolated cWH basepair
geometric
IL_3SJ2_002
IL_10892.2
IL_7WTV_0461/2/928:931,
1/2/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_7WTV_0471/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7WTV_0481/2/943:945,
1/2/981:983		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.3
IL_7WTV_0491/2/952:956,
1/2/967:974		Kink-turn
geometric
IL_4V88_434
NA
IL_7WTV_0501/2/1042:1047,
1/2/1071:1073		Other IL
geometric
IL_4V88_435
NA
IL_7WTV_0511/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_7WTV_0521/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7WTV_0531/2/1098:1101,
1/2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_7WTV_0541/2/1101:1103,
1/2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_01003.3
IL_7WTV_0551/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7WTV_0561/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4V88_440
NA
IL_7WTV_0571/2/1206:1207,
1/2/1692:1696		No text annotation
IL_7WTV_0581/2/1214:1217,
1/2/1681:1685		C-loop
geometric
IL_4V88_443
NA
IL_7WTV_0591/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
geometric
IL_3GM7_005
IL_01003.3
IL_7WTV_0601/2/1235:1236,
1/2/1521:1523		Minor groove platform
geometric
IL_2QWY_009
IL_34520.3
IL_7WTV_0751/2/1537:1539,
1/2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3TD0_001
NA
IL_7WTV_0941/2/1541:1550,
1/2/1582:1592		No text annotation
IL_7WTV_0781/2/1604:1610,
1/2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7WTV_0951/2/1720:1722,
1/2/1812:1813		No text annotation
IL_7WTV_0851/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
geometric
IL_4E48_004
IL_01003.3
IL_7WTV_0861/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_4V88_471
NA
IL_7WTV_0871/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_01003.3
IL_7WTV_0881/2/1742:1746,
1/2/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA

Problematic loops

#loop idProblemSequence
IL_7WTV_012No text annotation
IL_7WTV_017No text annotation
IL_7WTV_029Isolated non-canonical cWW pair
IL_7WTV_096No text annotation
IL_7WTV_038No text annotation
IL_7WTV_043Isolated non-canonical cWW pair
IL_7WTV_061No text annotation
IL_7WTV_062Isolated non-canonical cWW pair
IL_7WTV_092No text annotation
IL_7WTV_063Other IL
IL_7WTV_064No text annotation
IL_7WTV_093No text annotation
IL_7WTV_065No text annotation
IL_7WTV_066No text annotation
IL_7WTV_067Single bulged U
IL_7WTV_068Decoding loop related
IL_7WTV_097No text annotation
IL_7WTV_069No text annotation
IL_7WTV_070Single bulged A
IL_7WTV_071Minor groove platform
IL_7WTV_072Single bulged A
IL_7WTV_073Isolated non-canonical cWW pair
IL_7WTV_074Tandem non-canonical cWW pairs
IL_7WTV_076No text annotation
IL_7WTV_077Isolated non-canonical cWW pair
IL_7WTV_079No text annotation
IL_7WTV_080Isolated non-canonical cWW pair
IL_7WTV_081No text annotation
IL_7WTV_082Isolated non-canonical cWW pair
IL_7WTV_083Double sheared
IL_7WTV_084Isolated cWH basepair
IL_7WTV_089Single bulged C
IL_7WTV_090Single stack bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7WTV_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_7WTV_0121/2/40:47,
1/2/479:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_7WTV_0021/2/682:685,
1/2/917:922,
1/2/1022:1023		No text annotation
J3_7WTV_0131/2/682:685,
1/2/917:923,
1/2/1019:1023		No text annotation
J3_7WTV_0031/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_8C3A_035
NA
J3_7WTV_0041/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_23895.1
J3_7WTV_0051/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7WTV_0061/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7WTV_0071/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641		No text annotation
J3_7WTV_0111/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7WTV_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_7WTV_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_7WTV_0011/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_7WTV_0021/2/30:34,
1/2/521:527,
1/2/558:565,
1/2/585:595,
1/2/641:644		No text annotation
J5_7WTV_0031/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:459,
1/2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_7WTV_0041/2/123:130,
1/2/182:185,
1/2/214:215,
1/2/310:312,
1/2/337:341		No text annotation

Problematic loops

#loop idProblemSequence
J3_7WTV_008No text annotation
J3_7WTV_009No text annotation
J3_7WTV_010No text annotation

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