HL_7WTX_018

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WTX_018 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.135

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7WTX|1|2|A|957
7WTX|1|2|G|958
7WTX|1|2|G|959
7WTX|1|2|U|960
7WTX|1|2|G|961
7WTX|1|2|A|962
7WTX|1|2|A|963
7WTX|1|2|A|964
7WTX|1|2|U|965
7WTX|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain x

RNA-binding protein PNO1