HL_7WU0_009

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7WU0|1|2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WU0_009 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.2618

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7WU0|1|2|C|462
7WU0|1|2|C|463
7WU0|1|2|A|464
7WU0|1|2|A|465
7WU0|1|2|G|466
7WU0|1|2|G|467

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain u

Pre-rRNA-processing protein TSR1 homolog