RNA 3D Hub //

7WU0 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7WU0_0011/2/7:17No text annotation
geometric
HL_4V88_186
NA
HL_7WU0_0021/2/69:80No text annotation
HL_7WU0_0031/2/156:162GNRA related
geometric
HL_4V88_188
NA
HL_7WU0_0041/2/197:202GNRA
geometric
HL_6AZ4_001
HL_37824.8
HL_7WU0_0051/2/288:295T-loop with 1 bulged base
geometric
HL_4V88_191
NA
HL_7WU0_0061/2/377:387No text annotation
HL_7WU0_0071/2/416:421No text annotation
geometric
HL_4V88_194
NA
HL_7WU0_0081/2/441:452No text annotation
geometric
HL_4V88_195
NA
HL_7WU0_0091/2/462:467UNCG
geometric
HL_6DLR_002
HL_34617.5
HL_7WU0_0101/2/498:504No text annotation
geometric
HL_4WF9_011
HL_75660.5
HL_7WU0_0111/2/539:544GNRA
geometric
HL_5M0J_002
HL_37824.8
HL_7WU0_0121/2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7WU0_0131/2/618:623GNRA variation
geometric
HL_4V88_200
NA
HL_7WU0_0141/2/820:828No text annotation
geometric
HL_4V88_203
NA
HL_7WU0_0161/2/885:901No text annotation
HL_7WU0_0171/2/957:966No text annotation
geometric
HL_4V88_206
NA
HL_7WU0_0181/2/994:999GNRA
geometric
HL_4V88_207
NA
HL_7WU0_0191/2/1054:1064No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7WU0_0201/2/1113:1120No text annotation
HL_7WU0_0211/2/1141:1146GNRA
geometric
HL_7A0S_020
HL_37824.8
HL_7WU0_0221/2/1178:1183GNRA
geometric
HL_3LQX_001
HL_37824.8
HL_7WU0_0231/2/1245:1254No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_7WU0_0241/2/1295:1304No text annotation
HL_7WU0_0251/2/1353:1358GNRA
geometric
HL_4V9F_015
HL_37824.8
HL_7WU0_0261/2/1366:1373T-loop related
geometric
HL_4LFB_025
HL_77436.5
HL_7WU0_0281/2/1460:1466No text annotation
homologous
HL_8C3A_222
NA
HL_7WU0_0291/2/1565:1570GNRA
geometric
HL_7A0S_015
HL_37824.8
HL_7WU0_0301/2/1614:1625No text annotation
geometric
HL_4V88_219
NA
HL_7WU0_0311/2/1658:1666No text annotation
homologous
HL_8P9A_223
NA
HL_7WU0_0321/2/1847:1852No text annotation
geometric
HL_2Y8W_001
HL_81100.2

Problematic loops

#loop idProblemSequence
HL_7WU0_015No text annotation
HL_7WU0_027No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7WU0_0011/2/23:25,
1/2/649:651		Isolated non-canonical cWW pair
geometric
IL_1Z7F_002
NA
IL_7WU0_0021/2/34:36,
1/2/519:521		Isolated non-canonical cWW pair
geometric
IL_5C5W_002
IL_87907.2
IL_7WU0_0031/2/37:40,
1/2/514:518		Double sheared
geometric
IL_4WF9_016
IL_09705.15
IL_7WU0_0041/2/41:47,
1/2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7WU0_0051/2/49:51,
1/2/476:477		Minor groove platform
geometric
IL_4V88_388
NA
IL_7WU0_0061/2/57:62,
1/2/86:88		No text annotation
geometric
IL_4V88_389
NA
IL_7WU0_0071/2/63:68,
1/2/81:85		No text annotation
geometric
IL_4V88_390
NA
IL_7WU0_0081/2/108:110,
1/2/351:353		Isolated non-canonical cWW pair
geometric
IL_1ZX7_006
IL_28037.2
IL_7WU0_0091/2/110:112,
1/2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_7WU0_0101/2/112:115,
1/2/348:349		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7WU0_0111/2/116:121,
1/2/343:347		No text annotation
geometric
IL_4V88_393
NA
IL_7WU0_0121/2/123:124,
1/2/339:341		Minor groove platform
geometric
IL_4V88_388
NA
IL_7WU0_0141/2/145:151,
1/2/167:174		tWH-tWH-tHW-tHW
geometric
IL_4V88_394
NA
IL_7WU0_0151/2/152:154,
1/2/164:166		Isolated cWH basepair
geometric
IL_3R1C_032
NA
IL_7WU0_0161/2/188:192,
1/2/207:211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
IL_17948.2
IL_7WU0_0171/2/216:219,
1/2/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_7WU0_0191/2/312:314,
1/2/336:337		Single bulged A
geometric
IL_4V88_399
NA
IL_7WU0_0201/2/317:319,
1/2/332:333		Single stack bend
geometric
IL_5TBW_009
NA
IL_7WU0_0211/2/359:364,
1/2/396:403		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_7WU0_0221/2/366:371,
1/2/393:394		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_7WU0_0231/2/411:413,
1/2/424:429		No text annotation
geometric
IL_4V88_404
NA
IL_7WU0_0241/2/437:439,
1/2/454:456		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_7WU0_0251/2/459:461,
1/2/468:470		Isolated near basepair
geometric
IL_3NJ7_004
IL_42997.3
IL_7WU0_0261/2/487:489,
1/2/511:512		Single bulged U
geometric
IL_4V88_407
NA
IL_7WU0_0271/2/491:495,
1/2/508:509		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_7WU0_0281/2/495:496,
1/2/506:508		Single bulged G
geometric
IL_5J7L_019
IL_00225.14
IL_7WU0_0291/2/529:530,
1/2/554:556		No text annotation
IL_7WU0_0301/2/532:534,
1/2/549:552		No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_7WU0_0311/2/535:537,
1/2/546:548		Intercalated cWW
geometric
IL_7A0S_044
IL_31737.3
IL_7WU0_0321/2/563:565,
1/2/585:592		No text annotation
IL_7WU0_0331/2/566:569,
1/2/581:584		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_77658.1
IL_7WU0_0341/2/599:606,
1/2/636:637		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_7WU0_0351/2/606:608,
1/2/635:636		Single bulged U
geometric
IL_4V88_407
NA
IL_7WU0_0361/2/611:617,
1/2/624:632		Kink-turn related
homologous
IL_8C3A_425
NA
IL_7WU0_0371/2/663:665,
1/2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7WU0_0381/2/665:671,
1/2/1161:1162		No text annotation
geometric
IL_4V88_416
NA
IL_7WU0_0391/2/673:675,
1/2/1030:1032		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_87907.2
IL_7WU0_0401/2/676:680,
1/2/1025:1029		tSH-tHW-tHS
geometric
IL_4V88_418
NA
IL_7WU0_0411/2/747:750,
1/2/793:795		No text annotation
geometric
IL_4V9F_053
IL_09990.4
IL_7WU0_0421/2/802:803,
1/2/860:863		Major groove minor groove platform; mini C-loop
geometric
IL_1S03_003
IL_68140.4
IL_7WU0_0431/2/805:807,
1/2/856:858		Isolated non-canonical cWW pair
geometric
IL_1ZH5_001
IL_87907.2
IL_7WU0_0441/2/807:815,
1/2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7WU0_0451/2/874:876,
1/2/910:912		Isolated non-canonical cWW pair
geometric
IL_1YZ9_002
IL_87907.2
IL_7WU0_0461/2/877:879,
1/2/907:909		Isolated non-canonical cWW pair
geometric
IL_5ED1_002
IL_87907.2
IL_7WU0_0471/2/922:923,
1/2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_7WU0_0481/2/925:926,
1/2/1015:1017		Single bulged U
geometric
IL_7KVT_002
IL_89505.4
IL_7WU0_0491/2/928:931,
1/2/1010:1013		Tandem non-canonical cWW pairs
geometric
IL_4V88_430
NA
IL_7WU0_0501/2/931:935,
1/2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7WU0_0511/2/943:945,
1/2/981:983		Isolated non-canonical cWW pair
geometric
IL_4V88_472
NA
IL_7WU0_0521/2/952:956,
1/2/967:974		Kink-turn
geometric
IL_4V88_434
NA
IL_7WU0_0531/2/1042:1047,
1/2/1071:1073		Other IL
geometric
IL_4V88_435
NA
IL_7WU0_0541/2/1047:1051,
1/2/1067:1071		tSH-tHW-tHS
geometric
IL_5J7L_037
IL_17136.7
IL_7WU0_0551/2/1091:1093,
1/2/1152:1158		No text annotation
geometric
IL_4V88_437
NA
IL_7WU0_0561/2/1098:1101,
1/2/1131:1134		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7WU0_0571/2/1101:1103,
1/2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_87907.2
IL_7WU0_0581/2/1108:1110,
1/2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7WU0_0591/2/1168:1175,
1/2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_4LFB_034
IL_41756.4
IL_7WU0_0601/2/1206:1208,
1/2/1691:1692		Single bulged G
geometric
IL_5J7L_040
IL_00225.14
IL_7WU0_0611/2/1214:1217,
1/2/1681:1685		C-loop
geometric
IL_4V88_443
NA
IL_7WU0_0621/2/1230:1232,
1/2/1526:1528		Isolated non-canonical cWW pair
geometric
IL_4V9F_017
IL_87907.2
IL_7WU0_0631/2/1235:1236,
1/2/1521:1523		Minor groove platform
geometric
IL_2QWY_009
IL_51454.3
IL_7WU0_0641/2/1270:1272,
1/2/1510:1512		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7WU0_0651/2/1272:1273,
1/2/1507:1510		Multiple bulged bases
geometric
IL_5TBW_136
NA
IL_7WU0_0661/2/1282:1287,
1/2/1314:1315		No text annotation
IL_7WU0_0951/2/1282:1290,
1/2/1309:1315		No text annotation
IL_7WU0_0671/2/1287:1290,
1/2/1309:1314		No text annotation
IL_7WU0_0681/2/1291:1293,
1/2/1306:1308		Other IL
homologous
IL_8C3A_454
NA
IL_7WU0_0691/2/1325:1327,
1/2/1502:1503		Single bulged U
geometric
IL_6MWN_006
IL_89505.4
IL_7WU0_0701/2/1330:1331,
1/2/1497:1499		Single bulged A
geometric
IL_7A0S_012
IL_31462.7
IL_7WU0_0711/2/1333:1334,
1/2/1493:1495		No text annotation
IL_7WU0_0721/2/1337:1338,
1/2/1488:1490		No text annotation
IL_7WU0_0731/2/1347:1349,
1/2/1380:1382		Isolated cWH basepair
geometric
IL_4WF9_045
IL_10167.6
IL_7WU0_0741/2/1363:1365,
1/2/1374:1375		Minor groove platform
geometric
IL_4V88_388
NA
IL_7WU0_0751/2/1387:1389,
1/2/1481:1482		Single bulged A
geometric
IL_8VMB_002
IL_31462.7
IL_7WU0_0761/2/1395:1399,
1/2/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_7WU0_0771/2/1537:1539,
1/2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_7WU0_0961/2/1541:1550,
1/2/1582:1592		No text annotation
IL_7WU0_0791/2/1560:1562,
1/2/1573:1575		Isolated non-canonical cWW pair
geometric
IL_1YZ9_001
NA
IL_7WU0_0801/2/1604:1610,
1/2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7WU0_0821/2/1706:1708,
1/2/1826:1828		Isolated non-canonical cWW pair
geometric
IL_4V83_235
IL_07785.1
IL_7WU0_0831/2/1708:1711,
1/2/1822:1826		No text annotation
IL_7WU0_0841/2/1714:1716,
1/2/1817:1819		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_7WU0_0851/2/1717:1720,
1/2/1813:1816		Double sheared
geometric
IL_4LFB_060
IL_09705.15
IL_7WU0_0971/2/1720:1722,
1/2/1812:1813		No text annotation
IL_7WU0_0871/2/1729:1731,
1/2/1803:1805		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_7WU0_0881/2/1733:1736,
1/2/1798:1801		Double sheared
geometric
IL_4V88_471
NA
IL_7WU0_0891/2/1739:1741,
1/2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_4E48_002
IL_87907.2
IL_7WU0_0901/2/1742:1746,
1/2/1788:1792		Triple sheared
geometric
IL_7RQB_075
NA
IL_7WU0_0911/2/1750:1751,
1/2/1782:1784		No text annotation
IL_7WU0_0921/2/1751:1752,
1/2/1780:1782		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7WU0_0931/2/1756:1759,
1/2/1774:1776		No text annotation
geometric
IL_4WSM_372
IL_09990.4
IL_7WU0_0941/2/1759:1760,
1/2/1772:1774		Single stack bend
geometric
IL_5J7L_269
IL_26793.1

Problematic loops

#loop idProblemSequence
IL_7WU0_013No text annotation
IL_7WU0_018No text annotation
IL_7WU0_078No text annotation
IL_7WU0_081No text annotation
IL_7WU0_086Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7WU0_0011/2/40:41,
1/2/481:487,
1/2/512:514		No text annotation
geometric
J3_8C3A_082
NA
J3_7WU0_0121/2/40:47,
1/2/479:487,
1/2/512:514		No text annotation
homologous
J3_8P9A_069
J3_46317.4
J3_7WU0_0021/2/816:819,
1/2/829:831,
1/2/843:848		No text annotation
homologous
J3_8C3A_035
NA
J3_7WU0_0031/2/938:941,
1/2/985:993,
1/2/1000:1004		No text annotation
homologous
J3_8P9A_074
J3_76375.1
J3_7WU0_0041/2/1094:1096,
1/2/1136:1140,
1/2/1147:1151		No text annotation
J3_7WU0_0051/2/1218:1221,
1/2/1645:1651,
1/2/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7WU0_0061/2/1225:1228,
1/2/1530:1532,
1/2/1638:1641		No text annotation
homologous
J3_8C3A_039
NA
J3_7WU0_0071/2/1237:1245,
1/2/1254:1266,
1/2/1516:1520		No text annotation
J3_7WU0_0081/2/1273:1277,
1/2/1320:1325,
1/2/1503:1507		No text annotation
J3_7WU0_0091/2/1350:1351,
1/2/1360:1363,
1/2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_7WU0_0101/2/1391:1395,
1/2/1450:1456,
1/2/1470:1479		No text annotation
J3_7WU0_0111/2/1532:1536,
1/2/1597:1604,
1/2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7WU0_0011/2/98:106,
1/2/355:357,
1/2/405:409,
1/2/431:432		No text annotation
homologous
J4_8C3A_021
NA
J4_7WU0_0021/2/671:673,
1/2/1032:1037,
1/2/1078:1089,
1/2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_7WU0_0011/2/30:34,
1/2/521:527,
1/2/558:563,
1/2/592:595,
1/2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_7WU0_0021/2/53:56,
1/2/89:96,
1/2/434:436,
1/2/457:459,
1/2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_7WU0_0031/2/125:130,
1/2/182:185,
1/2/214:215,
1/2/310:312,
1/2/337:338		No text annotation

Problematic loops

No problematic loops


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