HL_7WU0_012

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7WU0_012 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1723

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WU0|1|2|A|569
7WU0|1|2|C|570
7WU0|1|2|U|571
7WU0|1|2|U|572
7WU0|1|2|U|573
7WU0|1|2|A|574
7WU0|1|2|A|575
7WU0|1|2|A|576
7WU0|1|2|U|577
7WU0|1|2|C|578
7WU0|1|2|C|579
7WU0|1|2|U|580
7WU0|1|2|U|581

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24

Chain u

Pre-rRNA-processing protein TSR1 homolog