HL_7XAM_013

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

7XAM|1|A|G|411, 7XAM|1|A|A|412, 7XAM|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1103

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7XAM|1|A|G|409
7XAM|1|A|U|410
7XAM|1|A|G|411
7XAM|1|A|A|412
7XAM|1|A|G|413
7XAM|1|A|A|414
7XAM|1|A|G|415
7XAM|1|A|C|416
7XAM|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24