HL_7XAM_029

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

7XAM|1|A|U|1075, 7XAM|1|A|G|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_029 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1385

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7XAM|1|A|G|1072
7XAM|1|A|G|1073
7XAM|1|A|A|1074
7XAM|1|A|U|1075
7XAM|1|A|A|1076
7XAM|1|A|A|1077
7XAM|1|A|G|1078
7XAM|1|A|C|1079

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain N

50S ribosomal protein L16