HL_7XAM_036

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

7XAM|1|A|C|1440, 7XAM|1|A|U|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_036 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1629

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7XAM|1|A|G|1439
7XAM|1|A|C|1440
7XAM|1|A|C|1441
7XAM|1|A|A|1442
7XAM|1|A|G|1443
7XAM|1|A|U|1444
7XAM|1|A|C|1445

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22