HL_7XAM_046

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7XAM|1|A|U|1911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_046 not in the Motif Atlas

Homologous match to HL_7RQB_042

Geometric discrepancy: 0.0728

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

7XAM|1|A|C|1909
7XAM|1|A|U|1910
7XAM|1|A|U|1911
7XAM|1|A|C|1912
7XAM|1|A|G|1913
7XAM|1|A|G|1914

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2