HL_7XAM_052

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_052 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3046

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7XAM|1|A|G|2173
7XAM|1|A|G|2174
7XAM|1|A|U|2175
7XAM|1|A|A|2176
7XAM|1|A|A|2177
7XAM|1|A|G|2178
7XAM|1|A|U|2179
7XAM|1|A|U|2180
7XAM|1|A|C|2181

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14