HL_7XAM_053

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

7XAM|1|A|A|2254, 7XAM|1|A|A|2255, 7XAM|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_053 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1049

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7XAM|1|A|G|2251
7XAM|1|A|U|2252
7XAM|1|A|A|2253
7XAM|1|A|A|2254
7XAM|1|A|A|2255
7XAM|1|A|G|2256
7XAM|1|A|A|2257
7XAM|1|A|U|2258
7XAM|1|A|G|2259
7XAM|1|A|C|2260

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L21

Chain b

50S ribosomal protein L32