HL_7XAM_057

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

7XAM|1|A|A|2492, 7XAM|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_057 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0904

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|C|2488
7XAM|1|A|U|2489
7XAM|1|A|A|2490
7XAM|1|A|A|2491
7XAM|1|A|A|2492
7XAM|1|A|A|2493
7XAM|1|A|U|2494
7XAM|1|A|G|2495
7XAM|1|A|U|2496
7XAM|1|A|A|2497
7XAM|1|A|A|2498
7XAM|1|A|C|2499
7XAM|1|A|G|2500

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27