HL_7XAM_064

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

7XAM|1|A|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XAM_064 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0766

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7XAM|1|A|U|2752
7XAM|1|A|G|2753
7XAM|1|A|G|2754
7XAM|1|A|A|2755
7XAM|1|A|G|2756
7XAM|1|A|C|2757
7XAM|1|A|A|2758
7XAM|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36