HL_7XK1_006

3D structure

PDB id

7XK1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (both in tRNA binding states)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

7XK1|1|D|U|57, 7XK1|1|D|U|58

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XK1_006 not in the Motif Atlas

Homologous match to HL_4YCP_003

Geometric discrepancy: 0.2352

The information below is about HL_4YCP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7XK1|1|D|G|51
7XK1|1|D|U|52
7XK1|1|D|U|53
7XK1|1|D|C|54
7XK1|1|D|G|55
7XK1|1|D|A|56
7XK1|1|D|U|57
7XK1|1|D|U|58
7XK1|1|D|C|59

Current chains

Chain D

tRNA(gly)

Nearby chains

Chain C

Glycine--tRNA ligase