HL_7XNX_018

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

7XNX|1|L1|A|1254, 7XNX|1|L1|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_018 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3082

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7XNX|1|L1|C|1252
7XNX|1|L1|G|1253
7XNX|1|L1|A|1254
7XNX|1|L1|A|1255
7XNX|1|L1|G|1256
7XNX|1|L1|A|1257
7XNX|1|L1|G|1258

Current chains

Chain L1

28S rRNA

Nearby chains