HL_7XNX_046

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_046 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2845

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7XNX|1|L1|G|2664
7XNX|1|L1|U|2665
7XNX|1|L1|U|2666
7XNX|1|L1|C|2667
7XNX|1|L1|G|2668
7XNX|1|L1|C|2669
7XNX|1|L1|C|2670

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a