HL_7XNX_050

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAC(A2M)G

Length

7 nucleotides

Bulged bases

7XNX|1|L1|C|2814

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_050 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0864

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7XNX|1|L1|U|2810
7XNX|1|L1|G|2811
7XNX|1|L1|A|2812
7XNX|1|L1|A|2813
7XNX|1|L1|C|2814
7XNX|1|L1|A2M|2815
7XNX|1|L1|G|2816

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19