HL_7XNX_070

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

7XNX|1|L1|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_070 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2621

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNX|1|L1|C|4417
7XNX|1|L1|G|4418
7XNX|1|L1|U|4419
7XNX|1|L1|U|4420
7XNX|1|L1|C|4421
7XNX|1|L1|A|4422
7XNX|1|L1|U|4423
7XNX|1|L1|A|4424
7XNX|1|L1|G|4425

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A

Chain Lm

Ubiquitin-60S ribosomal protein L40