HL_7XNX_078

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

7XNX|1|L1|G|4910, 7XNX|1|L1|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_078 not in the Motif Atlas

Geometric match to HL_5TBW_069

Geometric discrepancy: 0.1315

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNX|1|L1|G|4907
7XNX|1|L1|G|4908
7XNX|1|L1|A|4909
7XNX|1|L1|G|4910
7XNX|1|L1|A|4911
7XNX|1|L1|G|4912
7XNX|1|L1|G|4913
7XNX|1|L1|C|4914

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a