HL_7XNX_104

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

7XNX|1|S2|U|889, 7XNX|1|S2|U|890, 7XNX|1|S2|G|891, 7XNX|1|S2|U|892, 7XNX|1|S2|U|897, 7XNX|1|S2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_104 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3221

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7XNX|1|S2|U|885
7XNX|1|S2|A|886
7XNX|1|S2|U|887
7XNX|1|S2|U|888
7XNX|1|S2|U|889
7XNX|1|S2|U|890
7XNX|1|S2|G|891
7XNX|1|S2|U|892
7XNX|1|S2|U|893
7XNX|1|S2|G|894
7XNX|1|S2|G|895
7XNX|1|S2|U|896
7XNX|1|S2|U|897
7XNX|1|S2|U|898
7XNX|1|S2|U|899
7XNX|1|S2|C|900
7XNX|1|S2|G|901

Current chains

Chain S2

18S rRNA

Nearby chains