HL_7XNX_108

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

7XNX|1|S2|U|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNX_108 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3982

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7XNX|1|S2|A|1113
7XNX|1|S2|U|1114
7XNX|1|S2|U|1115
7XNX|1|S2|C|1116
7XNX|1|S2|C|1117
7XNX|1|S2|C|1118
7XNX|1|S2|A|1119
7XNX|1|S2|U|1120

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain Sb

40S ribosomal protein S27