HL_7XNX_111
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7XNX|1|S2|A|1253
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7XNX_111 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1193
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7XNX|1|S2|G|1245
7XNX|1|S2|A|1246
7XNX|1|S2|C|1247
7XNX|1|S2|B8N|1248
7XNX|1|S2|C|1249
7XNX|1|S2|A|1250
7XNX|1|S2|A|1251
7XNX|1|S2|C|1252
7XNX|1|S2|A|1253
7XNX|1|S2|C|1254
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CE
- Ubiquitin-40S ribosomal protein S27a
- Chain SQ
- 40S ribosomal protein S16
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
Coloring options: