HL_7XNY_012

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCGC

Length

4 nucleotides

Bulged bases

7XNY|1|L1|C|519

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_012 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3241

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7XNY|1|L1|G|518
7XNY|1|L1|C|519
7XNY|1|L1|G|642
7XNY|1|L1|C|643

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13