RNA 3D Hub //

7XNY Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7XNY_0011/L1/37:44No text annotation
geometric
HL_4V9F_006
HL_48677.1
HL_7XNY_0021/L1/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7XNY_0031/L1/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_7XNY_0041/L1/131:137No text annotation
homologous
HL_8C3A_004
NA
HL_7XNY_0051/L1/204:211T-loop with 2 bulged bases not stacked
geometric
HL_1P6V_004
NA
HL_7XNY_0061/L1/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_7XNY_0071/L1/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7XNY_0081/L1/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_7XNY_0091/L1/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7XNY_0101/L1/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7XNY_1191/L1/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7XNY_1201/L1/1172:1189No text annotation
HL_7XNY_0141/L1/1174:1186No text annotation
HL_7XNY_1211/L1/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7XNY_0171/L1/1364:1373No text annotation
HL_7XNY_0181/L1/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7XNY_0201/L1/1436:1448Externally structured
geometric
HL_8C3A_022
NA
HL_7XNY_0211/L1/1480:1484No text annotation
HL_7XNY_0221/L1/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_7XNY_0231/L1/1593:1602No text annotation
homologous
HL_5TBW_020
NA
HL_7XNY_0241/L1/1627:1635No text annotation
homologous
HL_5TBW_021
NA
HL_7XNY_0251/L1/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7XNY_1221/L1/1756:1775No text annotation
HL_7XNY_0271/L1/1816:1823No text annotation
homologous
HL_5TBW_024
NA
HL_7XNY_0281/L1/1864:1870GNRA
homologous
HL_5TBW_025
NA
HL_7XNY_0291/L1/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_7XNY_0331/L1/2257:2261Mini UNCG
geometric
HL_4L8H_001
HL_90436.1
HL_7XNY_0341/L1/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7XNY_0351/L1/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7XNY_0361/L1/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7XNY_0371/L1/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7XNY_0391/L1/2523:2532No text annotation
homologous
HL_5TBW_035
NA
HL_7XNY_0411/L1/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7XNY_0421/L1/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_7XNY_0431/L1/2664:2670UNCG variation
geometric
HL_2CZJ_007
NA
HL_7XNY_0441/L1/2704:2712No text annotation
geometric
HL_2Y9H_005
HL_51020.1
HL_7XNY_0451/L1/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7XNY_0461/L1/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_7XNY_0471/L1/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_7XNY_0481/L1/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_7XNY_0501/L1/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7XNY_0511/L1/3639:3649No text annotation
homologous
HL_5TBW_046
NA
HL_7XNY_0521/L1/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7XNY_1231/L1/3724:3729GNRA
homologous
HL_8P9A_159
HL_34789.1
HL_7XNY_0541/L1/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_7XNY_0551/L1/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7XNY_0561/L1/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7XNY_0601/L1/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7XNY_0611/L1/4210:4222No text annotation
homologous
HL_8P9A_166
HL_02042.1
HL_7XNY_0621/L1/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_7XNY_0631/L1/4270:4277Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7XNY_0641/L1/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7XNY_0651/L1/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7XNY_0661/L1/4352:4362No text annotation
geometric
HL_4V83_139
NA
HL_7XNY_0671/L1/4417:4425No text annotation
homologous
HL_8C3A_062
NA
HL_7XNY_0681/L1/4474:4481No text annotation
homologous
HL_5TBW_062
NA
HL_7XNY_0691/L1/4497:4503No text annotation
homologous
HL_8C3A_064
NA
HL_7XNY_0701/L1/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_7XNY_0711/L1/4603:4608GNRA
geometric
HL_7RQB_064
NA
HL_7XNY_0721/L1/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7XNY_0731/L1/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7XNY_0751/L1/4907:4914No text annotation
geometric
HL_8G9Z_001
HL_75660.6
HL_7XNY_0761/L1/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_7XNY_0771/L1/5021:5028No text annotation
HL_7XNY_1241/L2/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7XNY_0781/L2/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7XNY_0791/L2/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7XNY_0801/L3/47:56No text annotation
geometric
HL_7RQB_001
NA
HL_7XNY_0811/L3/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7XNY_0821/L3/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_7XNY_0831/L3/122:128No text annotation
HL_7XNY_0841/S2/7:17No text annotation
homologous
HL_4V88_186
NA
HL_7XNY_0861/S2/156:162GNRA related
homologous
HL_4V88_188
NA
HL_7XNY_0881/S2/288:295No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_7XNY_0901/S2/377:387No text annotation
HL_7XNY_0911/S2/416:421No text annotation
homologous
HL_4V88_194
NA
HL_7XNY_0921/S2/441:452No text annotation
homologous
HL_4V88_195
NA
HL_7XNY_1261/S2/462:467UNCG
homologous
HL_8C3A_202
NA
HL_7XNY_0941/S2/498:504No text annotation
homologous
HL_4V88_197
NA
HL_7XNY_0961/S2/569:581No text annotation
geometric
HL_4V88_199
NA
HL_7XNY_0971/S2/618:623GNRA variation
homologous
HL_4V88_200
NA
HL_7XNY_0991/S2/820:828No text annotation
homologous
HL_4V88_203
NA
HL_7XNY_1001/S2/834:841No text annotation
HL_7XNY_1021/S2/957:966No text annotation
homologous
HL_4V88_206
NA
HL_7XNY_1031/S2/994:999GNRA
homologous
HL_4V88_207
NA
HL_7XNY_1041/S2/1054:1064No text annotation
homologous
HL_4V88_208
NA
HL_7XNY_1051/S2/1113:1120No text annotation
HL_7XNY_1061/S2/1141:1146GNRA
homologous
HL_4V88_210
NA
HL_7XNY_1071/S2/1178:1183GNRA
homologous
HL_4V88_211
NA
HL_7XNY_1081/S2/1245:1254No text annotation
homologous
HL_8P9A_215
HL_97521.1
HL_7XNY_1091/S2/1295:1304Anticodon loop related
homologous
HL_4V88_213
NA
HL_7XNY_1101/S2/1353:1358GNRA
homologous
HL_4V88_214
NA
HL_7XNY_1111/S2/1366:1373No text annotation
homologous
HL_4V88_215
NA
HL_7XNY_1121/S2/1416:1424No text annotation
HL_7XNY_1131/S2/1460:1466GNRA
homologous
HL_4V88_217
NA
HL_7XNY_1141/S2/1565:1570GNRA
homologous
HL_4V88_218
NA
HL_7XNY_1151/S2/1614:1625No text annotation
homologous
HL_4V88_219
NA
HL_7XNY_1161/S2/1658:1666No text annotation
homologous
HL_4V88_220
NA
HL_7XNY_1181/S2/1847:1852GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_7XNY_011No text annotation
HL_7XNY_012No text annotation
HL_7XNY_013No text annotation
HL_7XNY_015No text annotation
HL_7XNY_016No text annotation
HL_7XNY_019No text annotation
HL_7XNY_026No text annotation
HL_7XNY_030No text annotation
HL_7XNY_031GNRA wlth tandem sheared
HL_7XNY_032No text annotation
HL_7XNY_038No text annotation
HL_7XNY_040GNRA
HL_7XNY_049Externally structured
HL_7XNY_053No text annotation
HL_7XNY_057No text annotation
HL_7XNY_058No text annotation
HL_7XNY_059No text annotation
HL_7XNY_074No text annotation
HL_7XNY_085No text annotation
HL_7XNY_125No text annotation
HL_7XNY_087No text annotation
HL_7XNY_089No text annotation
HL_7XNY_093No text annotation
HL_7XNY_095Externally structured
HL_7XNY_098No text annotation
HL_7XNY_101Externally structured
HL_7XNY_117No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7XNY_0011/L1/6:7,
1/L3/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_7XNY_0021/L1/12:14,
1/L3/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_7XNY_0031/L1/16:18,
1/L3/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_7XNY_0041/L1/26:27,
1/L1/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_7XNY_0051/L1/30:37,
1/L1/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_7XNY_0061/L1/81:88,
1/L1/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_7XNY_0071/L1/118:122,
1/L1/147:153		No text annotation
IL_7XNY_0081/L1/125:126,
1/L1/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_7XNY_3231/L1/169:173,
1/L1/263:266		No text annotation
IL_7XNY_0091/L1/175:177,
1/L1/260:261		Single stack bend
geometric
IL_5J7L_249
NA
IL_7XNY_0121/L1/182:189,
1/L1/252:255		No text annotation
IL_7XNY_0131/L1/195:196,
1/L1/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_7XNY_0141/L1/199:201,
1/L1/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_7XNY_0151/L1/339:342,
1/L3/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
NA
IL_7XNY_0161/L1/348:350,
1/L3/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7XNY_0171/L1/387:390,
1/L1/401:414		No text annotation
homologous
IL_8C3A_015
NA
IL_7XNY_0191/L1/415:421,
1/L3/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7XNY_0201/L1/443:446,
1/L1/1300:1304		No text annotation
geometric
IL_4PHY_003
NA
IL_7XNY_0211/L1/448:450,
1/L1/1297:1298		No text annotation
IL_7XNY_0221/L1/459:460,
1/L1/695:697		Single bulged C
geometric
IL_3W3S_001
NA
IL_7XNY_0231/L1/462:464,
1/L1/691:693		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_01003.1
IL_7XNY_0241/L1/466:472,
1/L1/682:689		No text annotation
IL_7XNY_0251/L1/482:485,
1/L1/671:672		Multiple bulged bases
geometric
IL_5XWP_001
IL_71421.1
IL_7XNY_0261/L1/487:488,
1/L1/665:669		Minor groove platform
geometric
IL_5J7L_247
NA
IL_7XNY_0291/L1/496:499,
1/L1/655:658		No text annotation
geometric
IL_4QIK_001
IL_32983.1
IL_7XNY_0301/L1/500:505,
1/L1/653:654		Multiple bulged bases
geometric
IL_1R3E_001
IL_44609.1
IL_7XNY_0311/L1/508:510,
1/L1/649:650		Single bulged A
geometric
IL_2VPL_002
IL_14190.1
IL_7XNY_0321/L1/512:516,
1/L1/645:647		No text annotation
IL_7XNY_0331/L1/709:710,
1/L1/1286:1288		Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_7XNY_0341/L1/723:724,
1/L1/942:945		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_7XNY_0351/L1/727:731,
1/L1/938:939		No text annotation
IL_7XNY_0361/L1/732:735,
1/L1/928:937		No text annotation
IL_7XNY_0371/L1/737:739,
1/L1/925:926		No text annotation
IL_7XNY_0381/L1/739:740,
1/L1/923:925		Minor groove platform
geometric
IL_8VTW_080
NA
IL_7XNY_0391/L1/740:742,
1/L1/922:923		No text annotation
IL_7XNY_0401/L1/745:752,
1/L1/911:919		No text annotation
geometric
IL_5TBW_020
NA
IL_7XNY_0431/L1/1073:1074,
1/L1/1237:1239		Single bulged A
geometric
IL_4R4V_003
IL_14190.1
IL_7XNY_0461/L1/1082:1084,
1/L1/1213:1217		Isolated cWS basepair
geometric
IL_4WF9_034
NA
IL_7XNY_0471/L1/1086:1087,
1/L1/1209:1211		Single bulged C
geometric
IL_3W3S_001
NA
IL_7XNY_0481/L1/1093:1094,
1/L1/1201:1203		No text annotation
IL_7XNY_0491/L1/1094:1096,
1/L1/1199:1201		Isolated non-canonical cWW contact
geometric
IL_5UNE_009
NA
IL_7XNY_0501/L1/1172:1174,
1/L1/1186:1189		No text annotation
geometric
IL_4V9F_053
IL_86407.1
IL_7XNY_0511/L1/1244:1245,
1/L1/1265:1267		Single bulged G
geometric
IL_4V88_442
NA
IL_7XNY_0521/L1/1357:1360,
1/L1/1379:1382		No text annotation
IL_7XNY_2911/L1/1357:1361,
1/L1/1376:1382		No text annotation
IL_7XNY_0531/L1/1360:1361,
1/L1/1376:1379		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.1
IL_7XNY_0541/L1/1425:1429,
1/L1/1455:1460		No text annotation
geometric
IL_1M5K_001
IL_47352.1
IL_7XNY_0551/L1/1431:1434,
1/L1/1450:1453		Double sheared
geometric
IL_3D0U_002
IL_58355.1
IL_7XNY_0561/L1/1467:1468,
1/L1/1496:1498		Single bulged A
homologous
IL_5TBW_024
NA
IL_7XNY_0571/L1/1474:1476,
1/L1/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_7XNY_0581/L1/1479:1480,
1/L1/1484:1486		Single bulged C
geometric
IL_5J7L_311
NA
IL_7XNY_2921/L1/1520:1522,
1/L1/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7XNY_2931/L1/1522:1526,
1/L1/1648:1655		No text annotation
homologous
IL_8P9A_256
IL_73855.1
IL_7XNY_0601/L1/1545:1546,
1/L1/1612:1614		Single bulged A
geometric
IL_7RQB_019
NA
IL_7XNY_0611/L1/1550:1551,
1/L1/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_7XNY_0621/L1/1551:1555,
1/L1/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_7XNY_0631/L1/1586:1589,
1/L1/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7XNY_0641/L1/1590:1592,
1/L1/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_7XNY_0651/L1/1624:1626,
1/L1/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7XNY_0661/L1/1671:1673,
1/L1/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7XNY_0671/L1/1686:1688,
1/L1/1848:1851		No text annotation
IL_7XNY_0691/L1/1723:1725,
1/L1/1838:1839		Single bulged G
homologous
IL_8C3A_040
NA
IL_7XNY_0701/L1/1732:1737,
1/L1/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7XNY_0711/L1/1737:1738,
1/L1/1790:1792		Minor groove platform
geometric
IL_6DLR_003
IL_34520.1
IL_7XNY_0721/L1/1739:1744,
1/L1/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7XNY_0731/L1/1746:1749,
1/L1/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7XNY_0741/L1/1749:1751,
1/L1/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_7XNY_0751/L1/1753:1756,
1/L1/1775:1777		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_68118.1
IL_7XNY_0761/L1/1756:1759,
1/L1/1773:1775		Isolated cWH basepair
geometric
IL_6F4H_001
NA
IL_7XNY_0771/L1/1814:1816,
1/L1/1823:1824		Single bulged G
geometric
IL_4V88_442
NA
IL_7XNY_0781/L1/1858:1860,
1/L1/1874:1876		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7XNY_0801/L1/1905:1909,
1/L1/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7XNY_0811/L1/1911:1918,
1/L1/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7XNY_0821/L1/1918:1920,
1/L1/2063:2064		No text annotation
IL_7XNY_0831/L1/1920:1922,
1/L1/2062:2063		No text annotation
IL_7XNY_0841/L1/1926:1933,
1/L1/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_7XNY_0851/L1/1933:1944,
1/L1/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7XNY_0861/L1/1946:1948,
1/L1/2035:2036		Single bulged U
homologous
IL_8C3A_056
NA
IL_7XNY_0871/L1/1957:1965,
1/L1/2022:2026		Kink-turn
homologous
IL_8C3A_057
NA
IL_7XNY_0901/L1/2083:2085,
1/L1/2272:2273		Single bulged C
geometric
IL_4C7O_003
NA
IL_7XNY_0921/L1/2290:2292,
1/L1/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_7XNY_0931/L1/2299:2301,
1/L1/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_7XNY_0941/L1/2302:2309,
1/L1/2329:2333		Kink-turn
homologous
IL_5TBW_059
NA
IL_7XNY_0951/L1/2312:2314,
1/L1/2325:2326		Single bulged A
homologous
IL_5TBW_060
NA
IL_7XNY_2961/L1/2358:2364,
1/L1/3858:3863		No text annotation
homologous
IL_8C3A_065
NA
IL_7XNY_0961/L1/2406:2409,
1/L1/2783:2784		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.1
IL_7XNY_0971/L1/2415:2419,
1/L1/2427:2429		C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_7XNY_0981/L1/2446:2450,
1/L1/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7XNY_0991/L1/2477:2479,
1/L1/2499:2500		No text annotation
IL_7XNY_1011/L1/2542:2547,
1/L1/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5J7L_282
NA
IL_7XNY_1021/L1/2549:2550,
1/L1/2768:2770		Single bulged U
geometric
IL_2A64_002
NA
IL_7XNY_1031/L1/2589:2593,
1/L1/2752:2756		Triple sheared
geometric
IL_7RQB_075
NA
IL_7XNY_1041/L1/2613:2614,
1/L1/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_7XNY_1051/L1/2614:2615,
1/L1/2722:2724		Single stack bend
geometric
IL_5TBW_070
NA
IL_7XNY_1061/L1/2646:2648,
1/L1/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_7XNY_1071/L1/2651:2653,
1/L1/2681:2682		Single bulged G
geometric
IL_3NDB_004
NA
IL_7XNY_1081/L1/2656:2662,
1/L1/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_7XNY_1091/L1/2832:2838,
1/L1/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_7XNY_1101/L1/2844:2846,
1/L1/3842:3844		Isolated tWW turn
geometric
IL_4WF9_063
IL_10432.1
IL_7XNY_2971/L1/2847:2850,
1/L1/3840:3841		Major groove platform; stack outside cWW
geometric
IL_8C3A_082
NA
IL_7XNY_2981/L1/2847:2855,
1/L1/3837:3841		No text annotation
homologous
IL_8P9A_305
IL_80252.1
IL_7XNY_1121/L1/2850:2855,
1/L1/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_7XNY_1131/L1/2867:2872,
1/L1/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_20700.1
IL_7XNY_1141/L1/2889:2891,
1/L1/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7XNY_1151/L1/2896:2897,
1/L1/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_7XNY_1161/L1/2901:2905,
1/L1/3589:3598		No text annotation
IL_7XNY_1201/L1/3632:3633,
1/L1/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_7XNY_1211/L1/3660:3665,
1/L1/3677:3684		Kink-turn related
homologous
IL_5TBW_083
NA
IL_7XNY_1221/L1/3700:3703,
1/L1/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_7XNY_1231/L1/3704:3705,
1/L1/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_7XNY_1251/L1/3708:3710,
1/L1/3741:3742		Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_7XNY_1261/L1/3710:3714,
1/L1/3739:3741		No text annotation
homologous
IL_8C3A_092
NA
IL_7XNY_2991/L1/3715:3721,
1/L1/3732:3738		No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_7XNY_1281/L1/3780:3781,
1/L1/3811:3814		Bulged stacked bases
homologous
IL_5TBW_089
NA
IL_7XNY_3001/L1/3781:3792,
1/L1/3808:3811		No text annotation
homologous
IL_8P9A_318
IL_84014.1
IL_7XNY_1301/L1/3895:3898,
1/L1/4563:4565		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_7XNY_1321/L1/3900:3902,
1/L1/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_7XNY_1331/L1/3913:3915,
1/L1/4388:4389		Single bulged U
homologous
IL_5TBW_093
NA
IL_7XNY_1341/L1/3916:3917,
1/L1/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_7XNY_1361/L1/3927:3929,
1/L1/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_7XNY_3011/L1/3945:3955,
1/L1/4057:4068		No text annotation
IL_7XNY_1381/L1/4082:4088,
1/L1/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_7XNY_1391/L1/4095:4097,
1/L1/4112:4113		Single bulged C
geometric
IL_1S03_006
IL_05642.1
IL_7XNY_1401/L1/4191:4192,
1/L1/4202:4204		Single bulged A
homologous
IL_5TBW_098
NA
IL_7XNY_1411/L1/4243:4245,
1/L1/4263:4267		No text annotation
homologous
IL_8C3A_108
NA
IL_7XNY_3021/L1/4291:4293,
1/L1/4317:4318		No text annotation
IL_7XNY_1431/L1/4295:4298,
1/L1/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7XNY_1441/L1/4347:4350,
1/L1/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_7XNY_3031/L1/4400:4401,
1/L1/4442:4444		Major groove platform
homologous
IL_8P9A_329
IL_48076.7
IL_7XNY_3041/L1/4401:4403,
1/L1/4440:4442		Isolated non-canonical cWW pair
homologous
IL_8P9A_330
IL_01003.1
IL_7XNY_3051/L1/4403:4405,
1/L1/4439:4440		No text annotation
homologous
IL_8P9A_331
IL_46637.1
IL_7XNY_1461/L1/4405:4407,
1/L1/4435:4439		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_7XNY_1471/L1/4412:4416,
1/L1/4426:4430		No text annotation
homologous
IL_8C3A_114
NA
IL_7XNY_1481/L1/4453:4454,
1/L1/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_7XNY_3061/L1/4456:4458,
1/L1/4520:4524		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_335
IL_68118.1
IL_7XNY_1501/L1/4458:4459,
1/L1/4517:4520		No text annotation
homologous
IL_8C3A_117
NA
IL_7XNY_1511/L1/4466:4468,
1/L1/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7XNY_3071/L1/4466:4470,
1/L1/4485:4491		No text annotation
IL_7XNY_1521/L1/4468:4470,
1/L1/4485:4489		No text annotation
geometric
IL_3DD2_004
NA
IL_7XNY_1541/L1/4495:4497,
1/L1/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7XNY_1561/L1/4537:4538,
1/L1/4547:4549		Single bulged A
homologous
IL_5TBW_113
NA
IL_7XNY_1571/L1/4580:4582,
1/L1/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_7XNY_1581/L1/4582:4585,
1/L1/4717:4721		Other IL
geometric
IL_4WF9_054
IL_74317.1
IL_7XNY_3081/L1/4590:4592,
1/L1/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.1
IL_7XNY_1591/L1/4596:4603,
1/L1/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7XNY_1611/L1/4624:4629,
1/L1/4669:4673		No text annotation
IL_7XNY_3091/L1/4632:4637,
1/L1/4662:4666		UAA/GAN related
homologous
IL_8C3A_127
NA
IL_7XNY_1631/L1/4638:4640,
1/L1/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.1
IL_7XNY_1641/L1/4641:4642,
1/L1/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_7XNY_1651/L1/4681:4685,
1/L1/4705:4709		UAA/GAN
homologous
IL_5TBW_120
NA
IL_7XNY_1661/L1/4740:4742,
1/L1/4958:4959		No text annotation
IL_7XNY_1671/L1/4743:4746,
1/L1/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7XNY_1681/L1/4749:4751,
1/L1/4948:4951		No text annotation
IL_7XNY_1691/L1/4756:4765,
1/L1/4869:4877		No text annotation
IL_7XNY_1701/L1/4769:4771,
1/L1/4863:4865		Isolated non-canonical cWW pair
geometric
IL_3GM7_006
IL_01003.1
IL_7XNY_1711/L1/4885:4889,
1/L1/4930:4934		Triple non-canonical cWW pairs
geometric
IL_8S95_002
NA
IL_7XNY_1721/L1/4891:4896,
1/L1/4924:4928		No text annotation
IL_7XNY_1741/L1/4972:4975,
1/L1/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7XNY_1751/L1/4992:4994,
1/L1/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_01003.1
IL_7XNY_1761/L1/4996:4997,
1/L1/5053:5055		No text annotation
IL_7XNY_1771/L1/5000:5002,
1/L1/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7XNY_1781/L1/5003:5009,
1/L1/5039:5044		No text annotation
IL_7XNY_1791/L1/5012:5014,
1/L1/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_7XNY_1801/L1/5014:5017,
1/L1/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7XNY_1811/L2/15:16,
1/L2/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7XNY_1821/L2/21:27,
1/L2/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7XNY_1831/L2/28:29,
1/L2/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7XNY_1841/L2/32:36,
1/L2/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_7XNY_1851/L2/71:78,
1/L2/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_7XNY_1861/L2/79:81,
1/L2/95:97		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_7XNY_1871/L2/82:85,
1/L2/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7XNY_1881/L3/64:66,
1/L3/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_7XNY_1891/S2/23:25,
1/S2/649:651		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
NA
IL_7XNY_1911/S2/34:36,
1/S2/519:521		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_7XNY_1921/S2/37:40,
1/S2/514:518		Double sheared
geometric
IL_4WF9_016
IL_58355.1
IL_7XNY_1931/S2/41:47,
1/S2/479:481		No text annotation
geometric
IL_4V88_387
NA
IL_7XNY_1941/S2/49:51,
1/S2/476:477		Minor groove platform
homologous
IL_4V88_388
NA
IL_7XNY_1951/S2/57:62,
1/S2/86:88		No text annotation
homologous
IL_4V88_389
NA
IL_7XNY_1961/S2/63:68,
1/S2/81:85		No text annotation
homologous
IL_4V88_390
NA
IL_7XNY_1971/S2/69:72,
1/S2/74:80		No text annotation
IL_7XNY_1991/S2/108:110,
1/S2/351:353		Isolated non-canonical cWW pair
geometric
IL_4TS2_004
IL_71625.1
IL_7XNY_2001/S2/110:112,
1/S2/349:351		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_01003.1
IL_7XNY_2011/S2/112:115,
1/S2/348:349		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7XNY_3101/S2/116:121,
1/S2/343:347		No text annotation
homologous
IL_8P9A_382
IL_31545.1
IL_7XNY_2031/S2/123:124,
1/S2/339:341		Minor groove platform
geometric
IL_4UYK_001
IL_34520.1
IL_7XNY_3111/S2/145:151,
1/S2/167:174		No text annotation
homologous
IL_8C3A_402
NA
IL_7XNY_3121/S2/152:154,
1/S2/164:166		No text annotation
homologous
IL_8P9A_384
IL_23751.1
IL_7XNY_2071/S2/188:192,
1/S2/207:211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_7XNY_2081/S2/216:219,
1/S2/302:309		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_7XNY_2101/S2/312:314,
1/S2/336:337		Single bulged A
homologous
IL_4V88_399
NA
IL_7XNY_2111/S2/317:319,
1/S2/332:333		Single stack bend
geometric
IL_5TBW_375
NA
IL_7XNY_2121/S2/359:364,
1/S2/396:403		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_7XNY_2131/S2/366:371,
1/S2/393:394		No text annotation
geometric
IL_5Y58_001
IL_45649.1
IL_7XNY_2141/S2/411:413,
1/S2/424:429		No text annotation
homologous
IL_4V88_404
NA
IL_7XNY_2151/S2/437:439,
1/S2/454:456		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_7XNY_3131/S2/459:461,
1/S2/468:470		Isolated non-canonical cWW pair
homologous
IL_8C3A_414
NA
IL_7XNY_3141/S2/487:489,
1/S2/511:512		Single bulged U
geometric
IL_4LFB_014
IL_97561.1
IL_7XNY_3151/S2/491:495,
1/S2/508:509		C-loop
homologous
IL_8C3A_416
NA
IL_7XNY_2171/S2/495:496,
1/S2/506:508		Single bulged G
geometric
IL_5J7L_019
NA
IL_7XNY_2181/S2/527:529,
1/S2/557:558		Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_7XNY_2211/S2/531:534,
1/S2/549:553		No text annotation
IL_7XNY_2221/S2/535:537,
1/S2/546:548		Multiple bulged bases
geometric
IL_5W1H_001
IL_71421.1
IL_7XNY_2231/S2/563:565,
1/S2/585:592		No text annotation
homologous
IL_8C3A_420
NA
IL_7XNY_2241/S2/566:569,
1/S2/581:584		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.1
IL_7XNY_2251/S2/599:606,
1/S2/636:637		SSU/LSU pseudoknot
homologous
IL_4V88_413
NA
IL_7XNY_2261/S2/606:608,
1/S2/635:636		Single bulged U
geometric
IL_5J7L_017
NA
IL_7XNY_2271/S2/611:617,
1/S2/624:632		Kink-turn related
homologous
IL_4V88_415
NA
IL_7XNY_2281/S2/663:665,
1/S2/1162:1164		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_7XNY_2291/S2/665:671,
1/S2/1161:1162		No text annotation
homologous
IL_4V88_416
NA
IL_7XNY_2301/S2/673:675,
1/S2/1030:1032		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_7XNY_2311/S2/676:680,
1/S2/1025:1029		tSH-tHW-tHS
homologous
IL_4V88_418
NA
IL_7XNY_2321/S2/802:803,
1/S2/860:863		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_7XNY_2331/S2/805:807,
1/S2/856:858		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_7XNY_2341/S2/807:815,
1/S2/849:856		No text annotation
geometric
IL_4V88_425
NA
IL_7XNY_2351/S2/832:834,
1/S2/841:842		Single stack bend
geometric
IL_7A0S_054
IL_15011.1
IL_7XNY_2361/S2/874:876,
1/S2/910:912		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_01003.1
IL_7XNY_2371/S2/877:879,
1/S2/907:909		Isolated cWH basepair
homologous
IL_4V88_427
NA
IL_7XNY_2381/S2/922:923,
1/S2/1019:1022		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_7XNY_2391/S2/925:926,
1/S2/1015:1017		Single bulged U
geometric
IL_7KVT_002
IL_97561.1
IL_7XNY_2401/S2/928:931,
1/S2/1010:1013		Tandem non-canonical cWW pairs
homologous
IL_4V88_430
NA
IL_7XNY_2411/S2/931:935,
1/S2/1007:1010		Tandem non-canonical cWW pairs
geometric
IL_4V88_431
NA
IL_7XNY_2421/S2/942:945,
1/S2/981:984		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_7XNY_2431/S2/952:956,
1/S2/967:974		Kink-turn
homologous
IL_4V88_434
NA
IL_7XNY_2441/S2/1042:1047,
1/S2/1071:1073		Other IL
geometric
IL_4V88_435
NA
IL_7XNY_2451/S2/1047:1051,
1/S2/1067:1071		tSH-tHW-tHS
homologous
IL_4V88_436
NA
IL_7XNY_2461/S2/1091:1093,
1/S2/1152:1158		No text annotation
homologous
IL_4V88_437
NA
IL_7XNY_2471/S2/1098:1101,
1/S2/1131:1134		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_7XNY_2481/S2/1101:1103,
1/S2/1129:1131		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_7XNY_2491/S2/1108:1110,
1/S2/1123:1124		Minor groove platform
geometric
IL_4V88_412
NA
IL_7XNY_2501/S2/1168:1175,
1/S2/1186:1191		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_7XNY_2511/S2/1203:1204,
1/S2/1694:1696		Single bulged A
homologous
IL_4V88_441
NA
IL_7XNY_2521/S2/1206:1208,
1/S2/1691:1692		Single bulged G
homologous
IL_4V88_442
NA
IL_7XNY_2531/S2/1214:1217,
1/S2/1681:1685		C-loop
geometric
IL_1KOG_007
IL_63596.12
IL_7XNY_2541/S2/1230:1232,
1/S2/1526:1528		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_7XNY_2551/S2/1235:1236,
1/S2/1521:1523		Minor groove platform
homologous
IL_4V88_445
NA
IL_7XNY_3161/S2/1270:1272,
1/S2/1510:1512		Isolated non-canonical cWW pair
geometric
IL_5MWI_006
NA
IL_7XNY_3251/S2/1282:1290,
1/S2/1309:1315		No text annotation
IL_7XNY_2571/S2/1287:1290,
1/S2/1309:1314		No text annotation
IL_7XNY_3181/S2/1325:1327,
1/S2/1502:1503		Single bulged U
homologous
IL_8C3A_455
NA
IL_7XNY_2601/S2/1329:1333,
1/S2/1498:1500		Isolated cWS basepair
geometric
IL_4LFB_044
IL_82453.1
IL_7XNY_3191/S2/1329:1335,
1/S2/1492:1500		No text annotation
homologous
IL_8P9A_439
IL_99893.1
IL_7XNY_2611/S2/1333:1335,
1/S2/1492:1498		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_7XNY_3201/S2/1337:1338,
1/S2/1488:1490		Single bulged A
homologous
IL_8C3A_458
NA
IL_7XNY_2641/S2/1347:1349,
1/S2/1380:1382		Isolated cWH basepair
geometric
IL_4V88_453
NA
IL_7XNY_3211/S2/1363:1365,
1/S2/1374:1375		Minor groove platform
homologous
IL_8C3A_460
NA
IL_7XNY_2661/S2/1395:1399,
1/S2/1447:1450		Tandem non-canonical cWW pairs
geometric
IL_6JDV_002
IL_15225.1
IL_7XNY_2671/S2/1402:1405,
1/S2/1441:1444		Minor groove platform
homologous
IL_4V88_456
NA
IL_7XNY_2681/S2/1408:1409,
1/S2/1432:1438		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7XNY_2691/S2/1412:1413,
1/S2/1427:1429		Single bulged G
geometric
IL_5J7L_019
NA
IL_7XNY_2701/S2/1537:1539,
1/S2/1594:1596		Isolated non-canonical cWW pair
geometric
IL_3SZX_002
IL_01003.1
IL_7XNY_3221/S2/1541:1550,
1/S2/1582:1592		No text annotation
IL_7XNY_2711/S2/1550:1558,
1/S2/1577:1582		180 degree turn
geometric
IL_5J7L_055
NA
IL_7XNY_2721/S2/1560:1562,
1/S2/1573:1575		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_01003.1
IL_7XNY_2731/S2/1604:1610,
1/S2/1629:1635		No text annotation
homologous
IL_8C3A_469
NA
IL_7XNY_2741/S2/1700:1702,
1/S2/1833:1836		No text annotation
homologous
IL_4V88_463
NA
IL_7XNY_2751/S2/1702:1705,
1/S2/1829:1833		No text annotation
homologous
IL_8P9A_453
IL_25873.1
IL_7XNY_2761/S2/1706:1708,
1/S2/1826:1828		Isolated non-canonical cWW pair
homologous
IL_4V88_465
NA
IL_7XNY_2771/S2/1708:1711,
1/S2/1822:1826		Tandem non-canonical cWW pairs
geometric
IL_3WBM_002
NA
IL_7XNY_2781/S2/1714:1716,
1/S2/1817:1819		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_7XNY_2791/S2/1717:1720,
1/S2/1813:1816		Double sheared
geometric
IL_4V88_468
NA
IL_7XNY_2801/S2/1720:1722,
1/S2/1812:1813		Single bulged U
homologous
IL_4V88_469
NA
IL_7XNY_2821/S2/1729:1731,
1/S2/1803:1805		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_7XNY_2831/S2/1733:1736,
1/S2/1798:1801		Double sheared
homologous
IL_4V88_471
NA
IL_7XNY_2841/S2/1739:1741,
1/S2/1793:1795		Isolated non-canonical cWW pair
geometric
IL_1UN6_005
IL_01003.1
IL_7XNY_2851/S2/1742:1746,
1/S2/1788:1792		Triple sheared
homologous
IL_4V88_474
NA

Problematic loops

#loop idProblemSequence
IL_7XNY_289No text annotation
IL_7XNY_010Single stack bend
IL_7XNY_290No text annotation
IL_7XNY_011Single stack bend
IL_7XNY_018Isolated non-canonical cWW pair
IL_7XNY_027Single stack bend
IL_7XNY_028Isolated non-canonical cWW pair
IL_7XNY_041Isolated non-canonical cWW pair
IL_7XNY_042No text annotation
IL_7XNY_044No text annotation
IL_7XNY_045Single stack bend
IL_7XNY_059No text annotation
IL_7XNY_068No text annotation
IL_7XNY_294No text annotation
IL_7XNY_079Tandem non-canonical cWW pairs
IL_7XNY_295No text annotation
IL_7XNY_088No text annotation
IL_7XNY_089Major groove platform with extra cWW
IL_7XNY_091No text annotation
IL_7XNY_100No text annotation
IL_7XNY_111Major groove platform with extra pair
IL_7XNY_117No text annotation
IL_7XNY_118Isolated non-canonical cWW pair
IL_7XNY_119Isolated non-canonical cWW pair
IL_7XNY_124No text annotation
IL_7XNY_127No text annotation
IL_7XNY_129No text annotation
IL_7XNY_131Isolated non-canonical cWW pair
IL_7XNY_135Isolated non-canonical cWW pair
IL_7XNY_137Isolated non-canonical cWW pair
IL_7XNY_142Decoding loop related
IL_7XNY_145No text annotation
IL_7XNY_149Tandem non-canonical cWW pairs
IL_7XNY_153Isolated non-canonical cWW pair
IL_7XNY_155No text annotation
IL_7XNY_160Isolated non-canonical cWW pair
IL_7XNY_162No text annotation
IL_7XNY_173Single bulged C
IL_7XNY_190No text annotation
IL_7XNY_198Isolated non-canonical cWW pair
IL_7XNY_202No text annotation
IL_7XNY_204No text annotation
IL_7XNY_205No text annotation
IL_7XNY_206Tandem non-canonical cWW pairs
IL_7XNY_209No text annotation
IL_7XNY_216No text annotation
IL_7XNY_219No text annotation
IL_7XNY_220No text annotation
IL_7XNY_256No text annotation
IL_7XNY_317No text annotation
IL_7XNY_324No text annotation
IL_7XNY_258No text annotation
IL_7XNY_259Isolated non-canonical cWW pair
IL_7XNY_262Isolated non-canonical cWW pair
IL_7XNY_263Isolated non-canonical cWW pair
IL_7XNY_265Minor groove platform with extra cWW
IL_7XNY_281Isolated non-canonical cWW pair
IL_7XNY_286No text annotation
IL_7XNY_287No text annotation
IL_7XNY_288Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7XNY_0011/L1/112:116,
1/L1/155:160,
1/L1/275:278		No text annotation
J3_7XNY_0311/L1/196:199,
1/L1/215:228,
1/L1/240:244		No text annotation
J3_7XNY_0321/L1/351:367,
1/L1/374:379,
1/L3/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7XNY_0021/L1/380:387,
1/L1/414:415,
1/L3/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7XNY_0331/L1/380:390,
1/L1/401:415,
1/L3/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7XNY_0341/L1/451:455,
1/L1/701:705,
1/L1/1292:1296		No text annotation
J3_7XNY_0031/L1/712:713,
1/L1/955:976,
1/L1/1278:1284		No text annotation
J3_7XNY_0041/L1/1531:1537,
1/L1/1622:1624,
1/L1/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_7XNY_0051/L1/1546:1548,
1/L1/1580:1584,
1/L1/1609:1612		No text annotation
homologous
J3_8C3A_004
NA
J3_7XNY_0351/L1/1726:1727,
1/L1/1802:1806,
1/L1/1832:1837		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_7XNY_0361/L1/2087:2110,
1/L1/2252:2257,
1/L1/2261:2270		No text annotation
J3_7XNY_0071/L1/2393:2399,
1/L1/2805:2807,
1/L1/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_7XNY_0081/L1/2402:2405,
1/L1/2785:2791,
1/L1/2800:2802		No text annotation
homologous
J3_5TBW_009
NA
J3_7XNY_0091/L1/2440:2445,
1/L1/2515:2519,
1/L1/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_7XNY_0371/L1/2451:2456,
1/L1/2465:2476,
1/L1/2501:2508		No text annotation
J3_7XNY_0101/L1/2551:2555,
1/L1/2572:2575,
1/L1/2757:2767		No text annotation
J3_7XNY_0111/L1/2575:2576,
1/L1/2585:2589,
1/L1/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_7XNY_0381/L1/2598:2602,
1/L1/2737:2738,
1/L1/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_7XNY_0121/L1/3937:3939,
1/L1/4074:4078,
1/L1/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_7XNY_0131/L1/4091:4094,
1/L1/4114:4129,
1/L1/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_7XNY_0391/L1/4228:4230,
1/L1/4331:4342,
1/L1/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_7XNY_0141/L1/4241:4243,
1/L1/4267:4269,
1/L1/4278:4283		No text annotation
homologous
J3_8C3A_010
NA
J3_7XNY_0151/L1/4463:4466,
1/L1/4491:4493,
1/L1/4507:4513		No text annotation
homologous
J3_5TBW_014
NA
J3_7XNY_0401/L1/4751:4754,
1/L1/4879:4883,
1/L1/4936:4948		No text annotation
J3_7XNY_0161/L1/4970:4972,
1/L1/4986:4991,
1/L1/5060:5063		No text annotation
J3_7XNY_0411/L2/9:14,
1/L2/65:66,
1/L2/109:110		No text annotation
homologous
J3_8P9A_066
J3_26985.1
J3_7XNY_0181/L3/44:45,
1/L3/58:64,
1/L3/95:99		No text annotation
homologous
J3_8C3A_060
NA
J3_7XNY_0421/S2/40:41,
1/S2/481:487,
1/S2/512:514		No text annotation
geometric
J3_4V88_078
NA
J3_7XNY_0431/S2/40:47,
1/S2/479:487,
1/S2/512:514		No text annotation
homologous
J3_8P9A_069
J3_63856.1
J3_7XNY_0201/S2/682:685,
1/S2/917:922,
1/S2/1022:1023		No text annotation
J3_7XNY_0441/S2/682:685,
1/S2/917:923,
1/S2/1019:1023		No text annotation
J3_7XNY_0211/S2/816:819,
1/S2/829:831,
1/S2/843:848		No text annotation
homologous
J3_4V88_032
NA
J3_7XNY_0221/S2/938:941,
1/S2/985:993,
1/S2/1000:1004		No text annotation
homologous
J3_4V88_033
NA
J3_7XNY_0231/S2/1094:1096,
1/S2/1136:1140,
1/S2/1147:1151		No text annotation
J3_7XNY_0241/S2/1218:1221,
1/S2/1645:1651,
1/S2/1673:1680		No text annotation
homologous
J3_8C3A_038
NA
J3_7XNY_0251/S2/1225:1228,
1/S2/1530:1532,
1/S2/1638:1641		No text annotation
homologous
J3_4V88_036
NA
J3_7XNY_0261/S2/1237:1244,
1/S2/1255:1266,
1/S2/1516:1520		No text annotation
homologous
J3_8C3A_040
NA
J3_7XNY_0451/S2/1272:1277,
1/S2/1320:1324,
1/S2/1504:1510		No text annotation
homologous
J3_8C3A_041
NA
J3_7XNY_0281/S2/1340:1345,
1/S2/1384:1389,
1/S2/1481:1486		No text annotation
homologous
J3_8P9A_080
J3_17077.1
J3_7XNY_0291/S2/1350:1351,
1/S2/1360:1363,
1/S2/1375:1379		No text annotation
homologous
J3_8C3A_085
NA
J3_7XNY_0461/S2/1391:1395,
1/S2/1450:1456,
1/S2/1470:1479		No text annotation
J3_7XNY_0301/S2/1532:1536,
1/S2/1597:1604,
1/S2/1635:1638		No text annotation
homologous
J3_8C3A_044
NA
J4_7XNY_0011/L1/111:112,
1/L1/278:283,
1/L1/304:310,
1/L1/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7XNY_0021/L1/196:199,
1/L1/215:222,
1/L1/226:228,
1/L1/240:244		No text annotation
J4_7XNY_0031/L1/981:983,
1/L1/1070:1072,
1/L1/1240:1243,
1/L1/1268:1273		No text annotation
J4_7XNY_0041/L1/2365:2371,
1/L1/2389:2391,
1/L1/2824:2829,
1/L1/3856:3857		No text annotation
J4_7XNY_0051/L1/2406:2410,
1/L1/2434:2439,
1/L1/2538:2539,
1/L1/2777:2784		No text annotation
J4_7XNY_0061/L1/2409:2410,
1/L1/2434:2439,
1/L1/2538:2539,
1/L1/2777:2783		No text annotation
J4_7XNY_0071/L1/2618:2619,
1/L1/2637:2642,
1/L1/2692:2698,
1/L1/2718:2719		No text annotation
J4_7XNY_0081/L1/3634:3638,
1/L1/3650:3654,
1/L1/3690:3694,
1/L1/3821:3826		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_7XNY_0091/L1/3696:3698,
1/L1/3752:3753,
1/L1/3771:3780,
1/L1/3814:3819		No text annotation
homologous
J4_8C3A_007
NA
J4_7XNY_0101/L1/4231:4235,
1/L1/4289:4291,
1/L1/4318:4319,
1/L1/4328:4330		No text annotation
J4_7XNY_0111/L1/4231:4235,
1/L1/4289:4293,
1/L1/4317:4319,
1/L1/4328:4330		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_7XNY_0121/L1/4587:4590,
1/L1/4620:4621,
1/L1/4676:4678,
1/L1/4712:4715		No text annotation
J4_7XNY_0131/S2/98:106,
1/S2/355:357,
1/S2/405:409,
1/S2/431:432		No text annotation
homologous
J4_8P9A_021
J4_15241.2
J4_7XNY_0141/S2/671:673,
1/S2/1032:1037,
1/S2/1078:1089,
1/S2/1160:1161		No text annotation
homologous
J4_8P9A_022
J4_14595.1
J5_7XNY_0011/L1/20:21,
1/L3/35:42,
1/L3/101:106,
1/L3/113:114,
1/L3/136:137		No text annotation
J5_7XNY_0021/L1/1335:1340,
1/L1/1516:1519,
1/L1/1658:1661,
1/L1/2288:2290,
1/L1/2345:2351		No text annotation
homologous
J5_8P9A_011
J5_08384.1
J5_7XNY_0031/L1/2855:2863,
1/L1/2887:2888,
1/L1/3613:3614,
1/L1/3618:3626,
1/L1/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_7XNY_0041/L1/3903:3910,
1/L1/4392:4400,
1/L1/4444:4453,
1/L1/4528:4534,
1/L1/4552:4557		No text annotation
J5_7XNY_0051/L1/3920:3923,
1/L1/4188:4191,
1/L1/4204:4205,
1/L1/4227:4228,
1/L1/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J5_7XNY_0061/S2/30:34,
1/S2/521:527,
1/S2/558:563,
1/S2/592:595,
1/S2/641:644		No text annotation
homologous
J5_8C3A_018
NA
J5_7XNY_0071/S2/30:34,
1/S2/521:527,
1/S2/558:565,
1/S2/585:595,
1/S2/641:644		No text annotation
J5_7XNY_0081/S2/53:56,
1/S2/89:96,
1/S2/434:436,
1/S2/457:459,
1/S2/470:474		No text annotation
homologous
J5_8C3A_020
NA
J5_7XNY_0091/S2/124:129,
1/S2/183:185,
1/S2/214:215,
1/S2/310:312,
1/S2/337:339		No text annotation
J6_7XNY_0011/L1/21:26,
1/L1/57:67,
1/L1/74:78,
1/L1/105:109,
1/L1/332:339,
1/L3/33:35		No text annotation
J6_7XNY_0021/L1/1352:1355,
1/L1/1384:1388,
1/L1/1395:1399,
1/L1/1418:1421,
1/L1/1464:1466,
1/L1/1499:1504		No text annotation
J6_7XNY_0031/L1/3920:3923,
1/L1/4188:4191,
1/L1/4204:4205,
1/L1/4227:4230,
1/L1/4331:4342,
1/L1/4370:4381		No text annotation
J7_7XNY_0011/L1/1666:1671,
1/L1/1684:1685,
1/L1/1852:1855,
1/L1/1879:1884,
1/L1/1895:1899,
1/L1/2077:2078,
1/L1/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_7XNY_006No text annotation
J3_7XNY_017No text annotation
J3_7XNY_019No text annotation
J3_7XNY_027No text annotation

Coloring options:
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