HL_7XNY_019

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

7XNY|1|L1|G|1408, 7XNY|1|L1|U|1410, 7XNY|1|L1|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_019 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3438

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7XNY|1|L1|C|1405
7XNY|1|L1|G|1406
7XNY|1|L1|C|1407
7XNY|1|L1|G|1408
7XNY|1|L1|C|1409
7XNY|1|L1|U|1410
7XNY|1|L1|C|1411
7XNY|1|L1|G|1412

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L29