HL_7XNY_039

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7XNY|1|L1|U|2530, 7XNY|1|L1|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7XNY_039 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0848

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7XNY|1|L1|G|2523
7XNY|1|L1|U|2524
7XNY|1|L1|U|2525
7XNY|1|L1|C|2526
7XNY|1|L1|A|2527
7XNY|1|L1|G|2528
7XNY|1|L1|A|2529
7XNY|1|L1|U|2530
7XNY|1|L1|C|2531
7XNY|1|L1|C|2532

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34